Gene: SEGI_24812
General Information
Structural Information
- Species Sequoiadendron giganteum
- Gene Identifier SEGI_24812
- Transcript Identifier SEGI_24812.1
- Gene Type Coding gene
- Location chr5 : 595911372-595916698 : positive
Gene Family Information
- ID HOM05D000216
- #Genes/#Species 1874/88
- Phylogenetic origin
- ID ORTHO05D003638
- #Genes/#Species 212/53
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid SEGI_24812.1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006176 | ISO | PLAZA Integrative Orthology | dATP biosynthetic process from ADP | ATCG00150 |
| GO:0015986 | IEA | InterPro | ATP synthesis coupled proton transport | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00150 |
| GO:0015252 | ISO | PLAZA Integrative Orthology | proton channel activity | ATCG00150 |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0015078 | IEA | InterPro | proton transmembrane transporter activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009535 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid membrane | ATCG00150 |
| GO:0009544 | ISO | PLAZA Integrative Orthology | chloroplast ATP synthase complex | ATCG00150 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | ATCG00150 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG00150 |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0045263 | IEA | InterPro | proton-transporting ATP synthase complex, coupling factor F(o) | |
| GO:0015935 | IEA | InterPro | small ribosomal subunit |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005706 | Ribosomal protein S2, bacteria/mitochondria/plastid |
| IPR000568 | ATP synthase, F0 complex, subunit A |
| IPR035908 | ATP synthase, F0 complex, subunit A superfamily |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR001865 | Ribosomal protein S2 |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR023591 | Ribosomal protein S2, flavodoxin-like domain superfamily |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| Mapman id | Description |
|---|---|
| 1.1.9.1.1 | Photosynthesis.photophosphorylation.ATP synthase complex.membrane CF0 subcomplex.subunit a |
| 17.7.2.2.2 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS2 |