Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.8e-109 398.7 282 100.0
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 7.4e-105 384.4 274 100.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.6e-97 359.4 274 92.7
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 2.3e-82 309.7 275 72.7
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.8e-80 302.8 283 76.7
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.8e-79 300.1 283 75.3
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.5e-76 289.7 191 85.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 5.6e-76 288.5 276 73.2
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.8e-71 273.5 287 70.4
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.4e-71 273.1 164 86.6
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.2e-71 271.2 162 85.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 3.5e-70 269.2 157 88.5
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 5.9e-70 268.5 294 64.3
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-69 266.9 158 87.3
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 5.0e-69 265.4 160 83.1
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.5e-68 263.8 184 81.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.9e-68 263.5 160 82.5
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 3.3e-68 262.7 158 86.1
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 4.3e-68 262.3 292 65.1
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 9.5e-68 261.2 218 72.9
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-67 260.8 158 84.2
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.2e-67 260.8 158 84.2
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-67 260.8 154 85.7
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-67 260.4 158 84.2
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-67 260.4 158 84.2
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.6e-67 260.4 158 84.2
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.6e-67 260.4 166 80.7
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.6e-67 260.4 153 85.6
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.6e-67 260.4 209 79.9
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.6e-67 260.4 164 83.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.6e-67 259.2 153 86.9
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.6e-67 259.2 153 86.9
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 3.6e-67 259.2 153 86.9
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.7e-67 258.8 153 86.3
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.7e-67 258.8 287 61.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.2e-67 258.5 167 81.4
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 6.2e-67 258.5 158 83.5
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 6.2e-67 258.5 158 83.5
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 6.2e-67 258.5 290 62.1
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 8.0e-67 258.1 165 81.2
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 8.0e-67 258.1 144 90.3
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.0e-66 257.7 160 84.4
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.0e-66 257.7 158 83.5
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-66 257.7 297 66.7
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.4e-66 257.3 153 85.6
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.8e-66 256.9 152 86.8
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-66 256.5 219 71.2
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.3e-66 256.5 231 68.8
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.3e-66 256.5 153 83.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.3e-66 256.5 156 85.3
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.3e-66 256.5 154 83.1
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.1e-66 256.1 154 82.5
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.1e-66 256.1 159 83.0
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.1e-66 256.1 298 64.1
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.1e-66 256.1 164 82.3
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 4.0e-66 255.8 161 83.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.2e-66 255.4 153 85.0
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.2e-66 255.4 213 71.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.2e-66 255.4 157 84.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 8.9e-66 254.6 155 84.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.5e-65 253.8 153 85.0
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.5e-65 253.8 164 80.5
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.5e-65 253.8 289 70.6
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.0e-65 253.4 157 84.1
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.0e-65 253.4 154 83.8
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 4.4e-65 252.3 164 78.0
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 5.8e-65 251.9 161 81.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 5.8e-65 251.9 161 81.4
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.8e-65 251.9 155 83.9
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 5.8e-65 251.9 161 81.4
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 5.8e-65 251.9 295 62.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 7.5e-65 251.5 303 61.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 7.5e-65 251.5 299 64.9
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 7.5e-65 251.5 240 65.8
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.5e-65 251.5 240 65.8
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 7.5e-65 251.5 161 81.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 9.8e-65 251.1 161 80.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.3e-64 250.8 149 84.6
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.3e-64 250.8 160 81.2
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.3e-64 250.8 165 78.2
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.7e-64 250.4 153 83.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.2e-64 250.0 154 83.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.2e-64 250.0 291 62.9
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 2.2e-64 250.0 288 71.5
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.2e-64 250.0 154 82.5
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 2.9e-64 249.6 160 82.5
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.9e-64 249.6 290 64.1
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.9e-64 249.6 154 82.5
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.7e-64 249.2 168 77.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.9e-64 248.8 154 83.1
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.9e-64 248.8 295 61.4
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.9e-64 248.8 164 78.7
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 6.4e-64 248.4 299 63.9
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.4e-64 248.4 287 56.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 6.4e-64 248.4 295 62.4
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 8.3e-64 248.1 155 83.2
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 8.3e-64 248.1 161 80.7
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 8.3e-64 248.1 236 59.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.1e-63 247.7 152 82.2
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.4e-63 247.3 160 79.4
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.9e-63 246.9 162 79.0
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.2e-63 246.1 164 76.8
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 4.1e-63 245.7 160 79.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 5.4e-63 245.4 297 62.0
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.4e-63 245.4 155 81.3
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.4e-63 245.4 155 81.3
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 9.2e-63 244.6 291 68.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 9.2e-63 244.6 154 81.8
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 9.2e-63 244.6 154 81.8
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.0e-62 243.4 240 63.3
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.7e-62 243.0 154 81.2
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.7e-62 243.0 147 84.4
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.5e-62 242.7 149 83.9
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 4.6e-62 242.3 153 82.4
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 4.6e-62 242.3 152 83.6
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.6e-62 242.3 154 81.2
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 3.0e-61 239.6 215 64.7
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.9e-61 239.2 283 59.0
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.9e-61 239.2 234 62.8
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 8.6e-61 238.0 142 84.5
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.3e-60 236.1 164 74.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.1e-59 233.4 231 62.3
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 2.1e-59 233.4 154 79.9
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.8e-59 233.0 155 76.8
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.8e-59 233.0 153 81.0
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 2.8e-59 233.0 151 80.8
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 6.2e-59 231.9 149 79.9
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 3.1e-58 229.6 154 77.9
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 8.9e-58 228.0 136 84.6
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.2e-57 227.6 153 77.8
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 2.0e-57 226.9 150 79.3
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 6.4e-56 221.9 297 65.0
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.2e-54 217.6 161 73.9
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.0e-53 213.0 132 82.6
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.5e-52 210.7 150 72.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 9.5e-52 208.0 132 81.1
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.7e-51 205.7 158 69.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.5e-49 200.7 290 59.7
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.5e-49 200.7 290 59.7
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 7.6e-49 198.4 127 80.3
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.2e-48 196.8 189 61.4
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 4.9e-48 195.7 123 79.7
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.2e-46 191.0 229 63.8
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.3e-45 187.6 157 62.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 7.3e-44 181.8 153 62.7
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 9.9e-41 171.4 160 60.6
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.1e-39 167.9 111 76.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.6e-38 164.1 125 67.2
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 7.8e-38 161.8 159 59.1
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 4.8e-35 152.5 94 80.9
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 4.2e-31 139.4 96 74.0
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.2e-31 139.4 160 51.2
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.4e-31 139.0 160 50.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.2e-30 137.9 104 68.3
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-30 137.5 158 50.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-30 137.5 158 50.6
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.0e-29 134.8 138 55.8
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.6e-22 110.9 166 47.0
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 6.2e-19 99.0 53 90.6
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.2e-15 86.7 48 87.5
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-15 86.3 49 83.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.9e-14 82.0 69 65.2
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.8e-13 80.9 52 71.2


User provided reference genes

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