Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.8e-128 462.2 281 100.0
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 3.5e-123 445.3 275 98.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.5e-89 333.6 257 84.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.8e-88 329.3 283 75.6
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.7e-80 302.4 303 65.7
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 4.1e-79 298.9 297 69.7
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.3e-79 298.5 282 75.2
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.7e-78 296.2 292 73.3
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.9e-78 295.0 293 70.6
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 6.5e-77 291.6 291 70.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 6.5e-77 291.6 293 70.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.5e-76 290.4 297 68.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.5e-76 290.4 301 68.1
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.9e-76 290.0 286 71.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.2e-76 288.9 283 76.7
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 4.2e-76 288.9 283 76.7
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-75 287.3 215 80.9
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.7e-75 286.2 301 65.8
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.8e-74 283.5 297 69.7
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.5e-73 280.4 247 73.3
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.5e-73 280.4 166 86.7
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 2.0e-73 280.0 252 66.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.6e-73 279.6 237 70.9
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 3.4e-73 279.3 284 71.8
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 4.4e-73 278.9 290 67.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.3e-72 277.3 284 70.8
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.3e-72 277.3 206 74.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.3e-72 277.3 163 88.3
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 2.2e-72 276.6 292 68.5
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 4.8e-72 275.4 287 71.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 6.3e-72 275.0 299 69.9
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.4e-71 273.9 276 71.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.4e-71 273.9 289 70.9
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.1e-71 272.3 167 85.0
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 7.0e-71 271.6 289 72.3
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-70 270.8 291 72.2
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.6e-70 270.4 244 71.3
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.7e-70 269.6 285 70.9
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 3.5e-70 269.2 194 77.3
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.5e-70 269.2 210 71.4
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.3e-69 267.3 164 83.5
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.3e-69 267.3 286 69.9
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.7e-69 266.9 285 70.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.7e-69 266.9 306 60.5
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.7e-69 266.9 290 69.0
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.7e-69 266.9 286 71.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.3e-69 266.5 242 66.9
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 2.9e-69 266.2 286 64.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.9e-69 266.2 292 69.9
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 3.8e-69 265.8 288 71.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 3.8e-69 265.8 288 71.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 3.8e-69 265.8 197 76.6
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 5.0e-69 265.4 234 70.5
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 6.5e-69 265.0 258 64.7
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 8.6e-69 264.6 167 83.8
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.1e-68 264.2 175 80.6
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.5e-68 263.8 182 78.6
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.2e-68 262.7 295 70.5
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 3.2e-68 262.7 175 79.4
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.5e-68 261.9 277 70.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 5.5e-68 261.9 238 73.1
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 5.5e-68 261.9 176 80.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.5e-68 261.2 280 68.9
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 9.5e-68 261.2 244 65.6
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 9.5e-68 261.2 152 88.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.6e-67 259.2 143 93.0
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.6e-67 259.2 151 88.7
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 4.7e-67 258.8 152 87.5
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 6.1e-67 258.5 309 62.5
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 8.0e-67 258.1 249 69.5
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.0e-66 257.7 178 78.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.0e-66 257.7 179 77.1
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-66 257.3 152 87.5
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.4e-66 257.3 285 68.4
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.8e-66 256.9 154 83.8
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.8e-66 256.9 248 70.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-66 256.5 221 69.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.3e-66 256.5 195 74.4
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.3e-66 256.5 204 72.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.3e-66 256.5 154 83.1
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.0e-66 256.1 190 75.8
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.0e-66 256.1 190 75.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.0e-66 255.8 230 71.3
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 5.2e-66 255.4 230 70.0
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-65 254.2 294 58.8
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.6e-65 253.1 233 66.5
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.4e-65 252.7 195 75.4
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.4e-65 252.7 195 75.4
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.4e-65 252.7 195 75.4
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 5.7e-65 251.9 291 63.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.7e-65 251.9 291 63.2
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 7.5e-65 251.5 237 70.9
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 7.5e-65 251.5 183 77.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.2e-64 250.0 221 71.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.8e-64 249.6 279 68.1
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 3.7e-64 249.2 206 71.8
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.7e-64 249.2 206 71.8
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 3.7e-64 249.2 153 84.3
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 4.9e-64 248.8 192 75.5
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 4.9e-64 248.8 192 75.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 6.3e-64 248.4 277 67.9
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 6.3e-64 248.4 146 87.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.1e-63 247.7 189 75.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-63 247.7 154 82.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-63 247.7 154 82.5
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.4e-63 247.3 291 68.0
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.8e-63 246.9 241 68.9
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.8e-63 246.9 285 68.8
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.4e-63 246.5 269 66.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 7.0e-63 245.0 151 84.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 9.2e-63 244.6 166 77.1
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 9.2e-63 244.6 300 62.0
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.2e-62 244.2 153 82.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.2e-62 244.2 279 66.3
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.2e-62 244.2 179 74.3
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.5e-62 242.7 152 82.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 3.5e-62 242.7 195 69.2
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 7.8e-62 241.5 290 65.5
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.0e-61 241.1 141 86.5
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 3.8e-61 239.2 175 74.3
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.8e-61 239.2 280 67.9
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.0e-61 238.8 215 70.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 6.6e-61 238.4 202 68.8
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 6.6e-61 238.4 284 65.5
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-60 237.7 297 56.6
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.5e-60 236.5 154 77.9
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.5e-60 236.5 256 60.2
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.0e-58 231.1 281 64.1
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.0e-58 231.1 281 64.1
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.0e-58 231.1 282 70.2
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 4.0e-58 229.2 135 85.9
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.2e-57 227.6 262 61.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.5e-57 227.3 238 62.6
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.7e-53 213.8 235 58.7
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.7e-53 213.8 290 62.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.9e-52 210.3 144 77.8
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.9e-52 210.3 292 56.5
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.2e-50 202.2 191 64.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-48 197.6 168 68.5
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.7e-48 197.2 195 60.0
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.9e-48 196.4 257 61.5
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 4.9e-48 195.7 150 72.0
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 4.9e-48 195.7 123 80.5
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.2e-46 191.0 160 63.1
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 6.0e-46 188.7 252 55.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.2e-43 181.0 152 62.5
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 8.9e-42 174.9 166 60.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-40 170.2 220 53.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 3.7e-40 169.5 124 71.0
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.6e-35 152.9 94 80.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.8e-33 145.6 190 51.1
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.9e-32 142.5 192 50.0
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.9e-32 142.5 192 50.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 8.4e-32 141.7 205 50.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.4e-31 140.2 102 70.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.3e-29 133.7 277 43.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.5e-28 131.0 137 54.0
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.7e-21 105.1 196 45.4
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 3.5e-14 83.2 291 43.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.9e-14 82.0 62 72.6
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.9e-14 82.0 69 65.2
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.8e-13 80.9 52 71.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 6.7e-13 79.0 154 50.0


User provided reference genes

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