Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g014800.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.1e-47 191.0 96 100.0
Solyc01g013780.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.9e-32 141.7 96 78.1
Solyc01g012740.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.5e-28 128.6 93 74.2
Solyc01g013840.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.6e-28 127.5 94 73.4
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 2.0e-25 119.0 89 68.5
Nitab4.5_0019786g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 5.8e-25 117.5 90 67.8
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 1.3e-24 116.3 89 68.5
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 1.3e-24 116.3 89 67.4
Solyc01g012670.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.7e-24 115.9 81 74.1
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.2e-24 115.5 94 62.8
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.9e-24 114.4 90 66.7
CAN.G321.26 Capsicum annuum HOM05D000399 ORTHO05D000304 1.4e-23 112.8 90 64.4
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.2e-23 111.7 88 67.0
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 4.1e-23 111.3 90 64.4
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 9.2e-23 110.2 90 63.3
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 6.0e-22 107.5 93 58.1
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.0e-21 106.7 93 58.1
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.5e-20 102.1 90 58.9
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 3.3e-20 101.7 90 58.9
Solyc01g014440.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.3e-20 101.3 67 77.6
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 2.1e-19 99.0 93 57.0
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 1.8e-18 95.9 84 59.5
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 3.1e-18 95.1 85 58.8
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 3.1e-18 95.1 93 55.9
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 5.2e-18 94.4 84 59.5
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 6.8e-18 94.0 85 57.6
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 6.8e-18 94.0 89 55.1
Solyc01g013920.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.9e-18 93.6 69 73.9
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.2e-17 93.2 93 53.8
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 1.2e-17 93.2 84 59.5
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 1.2e-17 93.2 92 55.4
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.5e-17 92.8 93 54.8
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.0e-17 92.4 84 59.5
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 2.0e-17 92.4 93 55.9
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 2.6e-17 92.0 93 55.9
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 2.6e-17 92.0 90 52.2
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.4e-17 91.7 93 52.7
Nitab4.5_0005002g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.4e-17 91.7 71 67.6
Gohir.A04G036800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.8e-17 90.9 93 52.7
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 5.8e-17 90.9 93 52.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 7.6e-17 90.5 93 52.7
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 7.6e-17 90.5 84 59.5
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 7.6e-17 90.5 81 59.3
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 9.9e-17 90.1 93 53.8
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 9.9e-17 90.1 84 57.1
SGA_v2.0_scaffold122G33198 Striga asiatica HOM05D000399 ORTHO05D000304 9.9e-17 90.1 81 58.0
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 9.9e-17 90.1 81 58.0
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 1.3e-16 89.7 93 50.5
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.3e-16 89.7 93 52.7
TAR374G0118 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.3e-16 89.7 85 55.3
Cfa006239 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.7e-16 89.4 91 56.0
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 2.2e-16 89.0 81 56.8
Medtr8g069975 Medicago truncatula HOM05D000399 ORTHO05D000304 2.2e-16 89.0 81 56.8
Solyc01g014400.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.2e-16 89.0 58 82.8
AUR62000283 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.9e-16 88.6 84 57.1
Manes.12G002750 Manihot esculenta HOM05D000399 ORTHO05D000304 2.9e-16 88.6 92 54.3
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 2.9e-16 88.6 81 58.0
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 2.9e-16 88.6 81 55.6
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 3.7e-16 88.2 91 50.5
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.7e-16 88.2 93 50.5
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.7e-16 88.2 81 58.0
Actinidia34701 Actinidia chinensis HOM05D000399 ORTHO05D000304 8.3e-16 87.0 91 51.6
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.1e-15 86.7 84 57.1
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 1.1e-15 86.7 84 54.8
Cc02_g14920 Coffea canephora HOM05D000399 ORTHO05D000304 1.4e-15 86.3 93 48.4
Eucgr.B01461 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.4e-15 86.3 84 52.4
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 1.4e-15 86.3 84 53.6
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.4e-15 86.3 84 53.6
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.4e-15 86.3 84 53.6
Gohir.A04G036700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.4e-15 86.3 93 50.5
Oeu034687.1 Olea europaea HOM05D000399 ORTHO05D000304 1.4e-15 86.3 91 51.6
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 1.9e-15 85.9 84 54.8
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.9e-15 85.9 84 54.8
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.9e-15 85.9 93 48.4
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.9e-15 85.9 85 52.9
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 1.9e-15 85.9 84 56.0
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 3.2e-15 85.1 94 51.1
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 3.2e-15 85.1 94 48.9
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 4.1e-15 84.7 81 54.3
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 5.4e-15 84.3 94 43.6
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 5.4e-15 84.3 81 55.6
Cc02_g14930 Coffea canephora HOM05D000399 ORTHO05D000304 7.1e-15 84.0 91 48.4
FAN05G5393 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.1e-15 84.0 84 53.6
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.1e-15 84.0 84 53.6
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 7.1e-15 84.0 93 47.3
SalBow6G0953 Salvia bowleyana HOM05D000399 ORTHO05D000304 7.1e-15 84.0 81 54.3
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 7.1e-15 84.0 81 54.3
CiPaw.08G113800 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.2e-14 83.2 84 56.0
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 1.2e-14 83.2 93 47.3
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 1.2e-14 83.2 81 53.1
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 1.2e-14 83.2 84 52.4
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.6e-14 82.8 81 51.9
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.6e-14 82.8 93 47.3
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 1.6e-14 82.8 95 43.2
CiPaw.08G113700 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.1e-14 82.4 84 54.8
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 2.1e-14 82.4 91 46.2
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 2.1e-14 82.4 95 46.3
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 2.7e-14 82.0 84 51.2
Actinidia03254 Actinidia chinensis HOM05D000399 ORTHO05D000304 3.5e-14 81.6 85 54.1
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.5e-14 81.6 84 50.0
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.5e-14 81.6 84 52.4
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 4.6e-14 81.3 81 51.9
Prupe.7G047700 Prunus persica HOM05D000399 ORTHO05D000304 4.6e-14 81.3 84 54.8
MD12G1087600 Malus domestica HOM05D000399 ORTHO05D000304 6.0e-14 80.9 84 53.6
Prupe.7G048000 Prunus persica HOM05D000399 ORTHO05D000304 7.8e-14 80.5 84 54.8
CAN.G544.3 Capsicum annuum HOM05D000399 ORTHO05D000304 1.0e-13 80.1 56 71.4
CDE12G0733 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.0e-13 80.1 81 51.9
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.0e-13 80.1 91 45.1
Aqoxy3G03689 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.3e-13 79.7 95 45.3
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 1.3e-13 79.7 81 51.9
TPR.G9044 Trifolium pratense HOM05D000399 ORTHO05D000304 1.3e-13 79.7 81 53.1
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.7e-13 79.3 84 50.0
CiPaw.08G113600 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.7e-13 79.3 84 52.4
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 2.3e-13 79.0 84 48.8
Prupe.7G047900 Prunus persica HOM05D000399 ORTHO05D000304 2.3e-13 79.0 84 56.0
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 2.3e-13 79.0 84 50.0
TPR.G26359 Trifolium pratense HOM05D000399 ORTHO05D000304 2.3e-13 79.0 81 50.6
Sp6g09960 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.0e-13 78.6 81 50.6
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 3.0e-13 78.6 86 46.5
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 3.9e-13 78.2 84 47.6
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 3.9e-13 78.2 81 50.6
vmacro19544 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.9e-13 78.2 64 64.1
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 6.6e-13 77.4 81 49.4
Solyc01g014420.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.6e-13 77.4 56 71.4
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 8.6e-13 77.0 84 50.0
Dinv21362 Davidia involucrata HOM05D000399 ORTHO05D000304 1.1e-12 76.6 91 49.5
PGR031G2252 Punica granatum HOM05D000399 ORTHO05D000304 1.1e-12 76.6 81 48.1
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-12 76.3 81 48.1
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.9e-12 75.9 84 46.4
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 1.9e-12 75.9 91 46.2
SHI13689 Sapria himalayana HOM05D000399 ORTHO05D000304 1.9e-12 75.9 81 49.4
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 2.5e-12 75.5 91 45.1
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 2.5e-12 75.5 84 47.6
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 2.5e-12 75.5 91 46.2
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.3e-12 75.1 84 47.6
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 4.3e-12 74.7 81 49.4
Aa31LG5G13760 Aethionema arabicum HOM05D000399 ORTHO05D000304 5.6e-12 74.3 81 48.1
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 5.6e-12 74.3 81 48.1
Aa31LG5G13830 Aethionema arabicum HOM05D000399 ORTHO05D000304 5.6e-12 74.3 81 48.1
Lj2C165T13 Lonicera japonica HOM05D000399 ORTHO05D000304 5.6e-12 74.3 91 42.9
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 5.6e-12 74.3 86 46.5
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 7.3e-12 73.9 81 46.9
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 7.3e-12 73.9 91 44.0
BolC5t35013H Brassica oleracea HOM05D000399 ORTHO05D000304 7.3e-12 73.9 91 44.0
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 7.3e-12 73.9 91 44.0
CiPaw.08G113100 Carya illinoinensis HOM05D000399 ORTHO05D000304 7.3e-12 73.9 84 51.2
MD14G1082600 Malus domestica HOM05D000399 ORTHO05D000304 7.3e-12 73.9 84 52.4
MD14G1082800 Malus domestica HOM05D000399 ORTHO05D000304 7.3e-12 73.9 84 52.4
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 9.6e-12 73.6 84 45.2
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 9.6e-12 73.6 81 48.1
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 9.6e-12 73.6 81 48.1
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 9.6e-12 73.6 84 46.4
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.2e-11 73.2 81 48.1
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 1.2e-11 73.2 81 48.1
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.8e-11 72.0 91 42.9
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 3.6e-11 71.6 81 49.4
MBI07_g11056_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 6.2e-11 70.9 84 47.6
HPP92_020099 Vanilla planifolia HOM05D000399 ORTHO05D000304 8.1e-11 70.5 94 41.5
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 1.4e-10 69.7 81 46.9
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 1.4e-10 69.7 129 36.4
Solyc01g012550.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.2e-10 67.8 76 50.0
Solyc01g013850.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.6e-09 65.5 48 66.7
arahy.Tifrunner.gnm1.ann1.MX0L3B Arachis hypogaea HOM05D000399 ORTHO05D000304 5.8e-09 64.3 93 39.8
arahy.Tifrunner.gnm1.ann1.02FWCT Arachis hypogaea HOM05D000399 ORTHO05D000304 9.9e-09 63.5 93 39.8
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 2.2e-08 62.4 124 35.5
AagrBONN_evm.TU.Sc2ySwM_117.732 Anthoceros agrestis HOM05D000399 ORTHO05D000304 3.8e-08 61.6 79 43.0
VMungo0540G2272 Vigna mungo HOM05D000399 ORTHO05D000304 3.8e-08 61.6 84 41.7
Zm00001eb219690 Zea mays HOM05D000399 ORTHO05D000304 3.8e-08 61.6 88 35.2
Dinv21363 Davidia involucrata HOM05D000399 ORTHO05D000304 4.9e-08 61.2 84 42.9
arahy.Tifrunner.gnm1.ann1.5JB048 Arachis hypogaea HOM05D000399 ORTHO05D000304 6.4e-08 60.8 94 37.2
arahy.Tifrunner.gnm1.ann1.3LM8QV Arachis hypogaea HOM05D000399 ORTHO05D000304 1.4e-07 59.7 94 37.2
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 2.4e-07 58.9 95 35.8
Phvul.006G111800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 4.2e-07 58.2 84 39.3
SalBow8G0161 Salvia bowleyana HOM05D000399 ORTHO05D000304 5.4e-07 57.8 80 40.0
SalBow8G2542 Salvia bowleyana HOM05D000399 ORTHO05D000304 5.4e-07 57.8 80 40.0
Zm00001eb143950 Zea mays HOM05D000399 ORTHO05D000304 5.4e-07 57.8 79 36.7
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 1.2e-06 56.6 75 36.0
Glyma.19G254900 Glycine max HOM05D000399 ORTHO05D000304 2.1e-06 55.8 84 38.1
Solyc01g013790.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.1e-06 55.8 49 61.2
Solyc01g013950.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.7e-06 55.5 35 74.3
Sp7g06180 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.5e-06 55.1 64 42.2
Solyc01g013860.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.5e-06 55.1 47 61.7
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 3.5e-06 55.1 75 37.3
SMO164G0052 Selaginella moellendorffii HOM05D000399 ORTHO05D000304 6.0e-06 54.3 80 33.8


User provided reference genes

Program Settings