Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 5.1e-114 414.8 280 100.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 8.2e-96 354.4 293 76.5
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.8e-95 353.2 293 78.2
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 5.3e-95 351.7 293 76.8
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.1e-91 339.7 285 80.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.8e-88 329.3 287 76.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-85 320.9 283 80.6
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.9e-84 316.6 289 80.6
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 4.7e-83 312.0 237 77.6
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.8e-82 310.1 280 79.3
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.8e-82 310.1 243 70.0
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.3e-80 303.9 183 84.7
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.7e-80 303.5 299 69.9
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.7e-80 303.5 284 79.2
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 6.3e-80 301.6 281 70.8
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.8e-79 300.1 300 70.0
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 3.1e-79 299.3 281 79.0
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 5.3e-79 298.5 300 70.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 9.1e-79 297.7 285 70.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-78 297.0 184 84.8
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-78 297.0 184 84.8
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.0e-78 296.6 186 83.9
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.0e-78 296.6 313 64.9
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.6e-78 296.2 191 84.3
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.7e-77 293.5 251 73.7
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.5e-77 291.2 295 69.2
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.5e-76 290.4 279 76.7
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.9e-76 290.0 165 91.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.5e-76 289.7 290 66.6
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 4.2e-76 288.9 167 88.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 5.5e-76 288.5 182 81.3
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 7.2e-76 288.1 182 81.3
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.2e-75 287.3 163 88.3
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.6e-75 287.0 232 79.3
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 6.1e-75 285.0 286 72.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 8.0e-75 284.6 282 70.2
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.0e-74 284.3 180 83.3
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.0e-74 284.3 193 78.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-74 283.5 277 75.5
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.3e-74 283.1 287 68.6
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.3e-74 283.1 287 68.6
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 6.7e-74 281.6 289 72.3
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 8.8e-74 281.2 170 87.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.5e-73 280.4 187 81.3
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.6e-73 279.6 230 80.4
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.3e-73 279.3 165 89.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.4e-73 278.9 281 72.6
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.4e-73 278.9 193 79.3
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.4e-73 278.1 290 62.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 7.4e-73 278.1 153 90.2
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 9.7e-73 277.7 246 71.5
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 9.7e-73 277.7 238 67.2
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 9.7e-73 277.7 291 73.5
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 9.7e-73 277.7 182 83.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 9.7e-73 277.7 153 89.5
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 9.7e-73 277.7 289 71.6
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.7e-72 276.9 230 78.3
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-72 276.6 183 79.2
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.2e-72 276.6 288 70.5
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 3.7e-72 275.8 281 71.5
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 6.3e-72 275.0 183 78.7
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 8.2e-72 274.6 183 78.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 8.2e-72 274.6 184 78.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-71 274.2 286 64.3
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.8e-71 273.5 180 78.3
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.8e-71 273.5 187 80.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 2.4e-71 273.1 292 69.2
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 3.1e-71 272.7 173 82.7
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 4.1e-71 272.3 151 90.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 7.0e-71 271.6 252 71.4
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 7.0e-71 271.6 198 74.7
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 7.0e-71 271.6 198 74.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 9.1e-71 271.2 169 81.7
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-70 270.8 184 77.7
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.2e-70 270.8 174 82.2
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.2e-70 270.8 170 82.9
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-70 270.4 184 77.7
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.6e-70 270.4 184 77.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.6e-70 270.4 184 79.9
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.6e-70 270.4 184 79.9
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.6e-70 269.6 151 90.1
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.6e-70 269.6 238 73.1
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-70 269.2 195 75.4
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-70 269.2 191 77.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 5.9e-70 268.5 291 73.2
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 7.7e-70 268.1 152 87.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 7.7e-70 268.1 152 87.5
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 7.7e-70 268.1 176 80.7
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.3e-69 267.3 182 80.8
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.2e-69 266.5 170 84.1
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 2.2e-69 266.5 282 73.0
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.2e-69 266.5 145 91.7
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.9e-69 266.2 189 75.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.8e-69 265.8 186 76.3
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 6.5e-69 265.0 177 78.0
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 8.5e-69 264.6 229 73.8
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.1e-68 264.2 152 89.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.5e-68 263.8 238 71.8
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 4.2e-68 262.3 244 70.1
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.5e-68 261.9 186 78.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 9.4e-68 261.2 258 64.7
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.4e-68 261.2 194 72.2
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.6e-67 260.4 151 86.8
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.8e-66 256.9 222 65.3
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.3e-66 256.5 184 76.1
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 3.0e-66 256.1 279 71.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 4.0e-66 255.8 172 79.1
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 5.2e-66 255.4 298 59.7
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 6.8e-66 255.0 287 63.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.2e-65 254.2 163 81.0
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-65 253.8 153 83.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-65 253.8 153 83.7
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.5e-65 253.8 163 81.0
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 2.0e-65 253.4 252 66.7
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.6e-65 253.1 182 76.4
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.3e-64 250.8 154 82.5
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.3e-64 250.8 154 82.5
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.3e-64 250.8 154 82.5
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.8e-64 249.6 153 82.4
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.4e-63 247.3 296 64.2
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.8e-63 246.9 244 67.2
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.8e-63 246.9 157 81.5
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 9.1e-63 244.6 179 74.3
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 7.7e-62 241.5 166 75.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.3e-61 240.7 151 82.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.3e-61 240.7 185 69.7
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 7.2e-60 235.0 144 83.3
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.6e-59 233.8 293 66.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.6e-59 232.6 294 65.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.6e-59 232.6 283 65.7
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.6e-59 232.6 283 65.7
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.0e-58 231.1 185 71.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 4.4e-57 225.7 193 68.4
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 4.4e-57 225.7 142 80.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.8e-56 223.0 273 69.2
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 8.3e-56 221.5 188 66.5
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.9e-54 215.3 192 64.6
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.3e-53 213.4 122 86.9
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.9e-53 213.0 136 79.4
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.5e-52 210.7 159 71.7
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.6e-51 206.1 201 63.2
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 2.6e-49 199.9 154 71.4
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.7e-48 197.2 185 60.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.9e-48 196.4 246 60.6
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.4e-47 194.1 157 65.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 3.5e-46 189.5 169 63.9
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 4.6e-46 189.1 109 88.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 5.0e-45 185.7 152 67.1
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.3e-42 176.8 124 74.2
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.3e-37 160.2 94 86.2
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 7.3e-36 155.2 109 73.4
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 4.7e-35 152.5 94 79.8
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.2e-33 147.9 187 51.9
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.8e-33 144.8 192 49.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.8e-33 144.8 192 49.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.4e-32 142.1 175 50.9
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 4.7e-27 125.9 138 52.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.7e-22 110.2 141 48.9
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 3.8e-16 89.7 198 37.4
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.3e-13 81.3 77 61.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.7e-13 80.9 40 97.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.1e-13 79.3 50 74.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 6.6e-13 79.0 132 49.2
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.3e-08 64.7 58 63.8
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 5.4e-07 59.3 67 53.7


User provided reference genes

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