Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 3765.3 1899 100.0
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 3228.3 1909 85.5
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 3221.0 1909 85.5
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 3185.2 1906 84.9
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2244.5 1968 59.5
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2241.8 1919 60.6
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2208.7 1924 60.2
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2164.0 1925 58.6
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2135.5 1926 58.3
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2108.2 1922 57.2
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2093.2 1914 57.5
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2092.8 1917 58.0
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2088.9 1928 57.2
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2087.0 1921 57.5
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2077.0 1922 57.1
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2071.2 1922 57.1
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2069.3 1928 57.6
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2067.4 1934 56.4
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2062.7 1926 56.2
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2062.0 1959 56.3
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2055.8 1923 56.7
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2050.8 1930 57.0
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2048.1 1920 55.9
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2038.8 1930 56.9
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2029.6 1920 55.6
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2025.0 1955 56.2
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2020.4 1933 55.5
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2015.4 1931 55.1
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2012.3 1908 56.1
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1998.8 1926 55.6
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1997.2 1927 55.4
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1994.5 1916 55.0
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1987.2 1919 54.7
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1963.0 1921 54.3
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1954.9 1919 54.2
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1946.8 2096 52.0
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1946.0 1929 54.7
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1944.1 1921 54.3
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1942.9 1971 53.3
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1936.0 1917 53.5
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1933.3 1922 54.0
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1920.6 1945 53.0
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1914.0 1920 53.1
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1897.1 1945 52.7
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1896.7 1919 53.1
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1896.3 1926 52.7
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1878.6 2417 45.5
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1873.6 1939 53.1
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1869.0 2041 50.4
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1837.8 1924 51.0
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1828.9 1942 51.9
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1822.4 1924 50.9
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1804.6 1928 50.9
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1800.0 1919 51.4
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1786.5 1912 50.8
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1776.9 1925 49.8
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1769.2 1863 50.5
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1764.2 1935 49.8
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1763.8 1928 50.4
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1754.2 1938 49.7
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1741.9 1793 52.1
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1733.4 1914 48.9
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1731.1 1908 49.1
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1725.7 1941 48.8
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1724.9 1967 48.0
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1723.4 1934 50.4
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1711.8 1907 48.1
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1711.4 1921 49.1
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1708.7 1932 49.0
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1706.8 1931 48.7
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1697.9 1940 49.0
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1696.4 1909 47.9
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1694.5 1904 48.0
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1694.1 1928 47.4
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1689.1 1902 48.1
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1687.5 1906 47.6
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1684.1 1872 49.6
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1677.9 1909 47.6
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1676.0 1910 47.4
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1671.4 1914 47.2
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1657.5 1927 47.3
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1652.5 1905 47.5
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1651.7 1920 47.9
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1648.3 1906 47.7
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1643.6 1831 49.0
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1643.2 1906 47.4
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1638.2 1919 47.4
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1634.8 1829 48.7
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1605.1 1932 46.4
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1598.2 1972 46.1
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1574.3 1908 45.6
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1563.9 1870 47.4
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1521.5 1951 44.1
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1442.2 1330 56.6
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1402.5 1590 49.9
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1395.2 1696 45.6
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1390.2 1943 40.5
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1389.0 1955 40.7
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1323.5 1222 57.0
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1245.0 1944 39.0
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1097.0 888 63.7
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 5.2e-303 1045.4 2075 34.0
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.3e-301 1040.8 1106 50.6
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 2.1e-299 1033.5 2052 33.9
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 7.8e-283 978.4 1140 47.2
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.2e-278 964.5 2001 32.8
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 7.6e-270 935.3 1921 32.6
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 6.9e-263 912.1 1689 34.9
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 9.7e-249 865.1 1112 44.4
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.0e-217 761.1 771 52.3
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 5.2e-186 656.8 903 40.4
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 1.4e-135 489.2 701 41.9
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 2.0e-84 319.3 259 60.2
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.2e-65 256.9 185 73.5
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 1.2e-62 246.9 564 30.3
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 1.1e-61 243.8 171 70.8
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 6.4e-51 208.0 218 44.0
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 5.1e-48 198.4 206 45.1
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 6.6e-48 198.0 223 52.0
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-46 193.7 638 26.8
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.4e-45 190.3 368 31.5
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 2.9e-43 182.6 141 67.4
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.5e-31 143.7 103 64.1
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 7.4e-31 141.4 160 47.5
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.0e-27 131.0 205 32.2
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.8e-24 120.2 95 64.2
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.5e-23 117.1 225 35.6
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 2.5e-23 116.3 129 54.3
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 4.3e-23 115.5 108 63.0
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 6.9e-21 108.2 82 64.6
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 6.1e-17 95.1 105 53.3
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.0e-12 80.1 64 53.1
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.0e-11 77.8 178 29.8
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.7e-11 77.0 64 51.6
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 7.2e-10 71.6 125 32.8
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 1.3e-06 60.8 85 40.0


User provided reference genes

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