Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 3.9e-139 498.0 241 100.0
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.4e-112 409.8 241 81.7
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 8.0e-108 394.0 241 78.0
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.0e-91 338.6 235 68.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.2e-90 337.0 206 78.2
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.8e-90 334.0 235 70.2
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 3.7e-89 332.0 235 68.1
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.3e-89 330.9 238 66.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 8.3e-89 330.9 238 66.0
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.4e-88 328.2 235 66.8
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 7.1e-88 327.8 240 65.8
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.7e-87 325.9 235 67.7
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.6e-87 325.1 235 66.4
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 8.6e-86 320.9 235 67.2
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.5e-85 320.1 232 67.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.4e-83 313.5 235 65.5
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.8e-83 313.2 235 62.6
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.8e-83 313.2 235 66.0
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 3.1e-83 312.4 236 66.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 5.2e-83 311.6 241 64.7
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 5.2e-83 311.6 235 65.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 6.8e-83 311.2 235 64.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 2.0e-82 309.7 237 65.4
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.4e-82 308.5 235 63.8
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.3e-81 307.0 241 64.3
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.3e-81 307.0 235 63.0
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.4e-80 302.8 240 61.7
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 7.1e-80 301.2 235 60.4
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.7e-79 299.3 235 62.6
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 4.6e-79 298.5 238 62.6
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 4.6e-79 298.5 240 60.8
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.6e-79 298.5 236 63.6
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.0e-79 298.1 236 63.1
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 6.0e-79 298.1 239 62.3
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.8e-79 297.7 236 63.6
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-78 297.0 239 61.1
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 5.1e-78 295.0 239 61.5
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.5e-77 293.5 239 61.1
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.5e-77 292.7 239 61.1
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.3e-77 292.4 253 59.3
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 5.6e-77 291.6 235 61.7
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 7.3e-77 291.2 235 60.9
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 9.6e-77 290.8 236 62.3
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.2e-76 290.4 240 58.3
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.1e-76 289.7 254 59.1
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.1e-76 289.7 235 60.0
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.6e-76 288.9 233 60.5
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.7e-76 288.5 241 60.6
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 4.7e-76 288.5 237 60.3
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 4.7e-76 288.5 240 60.0
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 6.2e-76 288.1 235 60.0
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.2e-76 288.1 240 59.2
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 8.1e-76 287.7 235 60.4
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-75 287.3 240 59.6
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.1e-75 287.3 240 59.2
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.1e-75 287.3 240 57.9
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.1e-75 287.3 236 61.0
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.8e-75 286.6 235 59.1
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.4e-75 286.2 234 60.7
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.1e-75 285.8 240 59.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.0e-75 285.4 240 58.8
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 8.9e-75 284.3 236 59.3
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 8.9e-75 284.3 236 59.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.2e-74 283.9 242 59.5
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.5e-74 283.5 236 58.9
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.4e-74 282.3 243 58.4
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.4e-74 282.3 240 58.3
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-73 280.4 240 59.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.3e-73 280.4 240 59.2
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.3e-73 280.4 240 59.2
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.2e-73 279.6 240 59.2
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-73 279.6 218 62.8
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.9e-73 279.3 236 58.5
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.8e-73 278.9 240 58.3
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.8e-73 278.9 237 57.4
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 3.8e-73 278.9 235 59.1
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 6.4e-73 278.1 250 57.6
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.4e-72 276.2 242 57.9
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 7.1e-72 274.6 241 58.1
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.6e-71 273.5 242 57.4
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.7e-71 272.7 237 58.2
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.6e-71 271.9 237 58.2
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.0e-71 271.6 235 58.7
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 6.0e-71 271.6 242 57.4
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 7.8e-71 271.2 244 57.4
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.0e-70 270.8 238 55.9
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.3e-70 270.4 237 57.4
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.3e-70 270.4 243 57.6
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.3e-70 270.4 242 57.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.7e-70 270.0 237 57.8
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 3.9e-70 268.9 237 57.4
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 8.7e-70 267.7 235 56.6
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 8.7e-70 267.7 243 56.8
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.1e-69 267.3 243 55.6
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-69 266.9 243 56.8
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-69 266.9 243 56.8
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.5e-69 266.9 240 54.2
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.3e-69 265.4 237 57.4
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 5.6e-69 265.0 242 55.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 7.3e-69 264.6 237 57.0
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 7.3e-69 264.6 237 57.0
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 9.6e-69 264.2 234 56.4
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-68 263.5 235 56.6
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-68 263.5 235 56.6
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.1e-68 263.1 237 56.5
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.8e-68 262.7 241 53.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.6e-68 262.3 243 55.1
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 4.8e-68 261.9 240 55.0
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 8.1e-68 261.2 217 59.9
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.4e-67 260.4 240 55.4
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-67 260.4 241 57.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.4e-67 259.6 235 57.0
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.4e-67 259.6 235 55.3
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 3.1e-67 259.2 237 55.7
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 3.1e-67 259.2 237 55.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 3.1e-67 259.2 238 57.1
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 3.1e-67 259.2 235 57.9
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.0e-66 256.5 241 56.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-66 256.5 241 56.0
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.6e-66 256.1 237 55.7
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.6e-66 256.1 237 55.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.8e-66 255.0 235 56.6
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 5.8e-66 255.0 226 58.4
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.6e-66 254.6 243 54.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.9e-65 252.7 235 54.5
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 3.8e-65 252.3 239 53.6
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.4e-65 251.5 243 54.3
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-64 250.4 210 60.0
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 5.4e-64 248.4 234 54.3
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.3e-64 247.7 210 60.0
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 3.5e-63 245.7 239 52.7
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 7.9e-63 244.6 237 54.4
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-62 244.2 235 55.3
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.3e-62 243.8 235 55.7
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.7e-62 243.4 233 52.8
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.6e-62 241.5 218 55.0
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 6.6e-62 241.5 246 53.3
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 7.4e-61 238.0 234 55.1
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.2e-58 230.7 229 52.8
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.0e-58 229.9 234 50.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.4e-58 229.2 232 50.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.4e-58 229.2 258 48.4
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 9.9e-58 227.6 239 51.5
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.9e-57 226.1 244 50.8
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.4e-56 223.8 209 54.1
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.9e-56 223.4 239 48.5
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 3.2e-56 222.6 224 54.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.0e-54 217.6 231 48.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 5.1e-54 215.3 244 47.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.6e-52 210.3 183 55.7
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.1e-52 209.9 237 48.9
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 5.3e-51 205.3 160 62.5
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.5e-50 202.2 166 57.8
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 6.5e-49 198.4 186 56.5
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.6e-47 193.7 159 62.3
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.6e-47 193.7 160 59.4
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.3e-46 189.9 164 56.1
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.8e-44 182.2 240 44.6
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.1e-43 181.0 262 40.5
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.1e-43 179.5 202 49.5
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.3e-41 174.1 260 38.8
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.9e-37 160.2 126 60.3
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.6e-36 157.1 209 43.5
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 3.2e-32 142.9 116 57.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.7e-31 139.8 98 67.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.6e-31 139.4 193 42.5
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.7e-28 130.6 121 53.7
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.9e-27 125.2 108 57.4
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.6e-26 123.2 119 54.6
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.9e-24 117.1 157 42.7
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 7.2e-24 115.2 141 44.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 9.4e-24 114.8 167 39.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.3e-22 110.2 94 60.6
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 3.7e-20 102.8 88 50.0
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.6e-18 97.4 90 56.7
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.6e-18 97.4 190 31.6
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 5.9e-18 95.5 66 65.2
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.0e-17 94.7 132 40.2
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 9.4e-16 88.2 81 56.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.0e-14 84.7 94 40.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.4e-13 79.3 99 42.4
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.5e-08 64.3 62 51.6
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.0e-06 58.2 179 26.8


User provided reference genes

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