Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1557.7 799 100.0
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1187.9 791 74.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1183.7 786 74.6
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1183.3 784 73.9
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1182.5 786 74.3
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1180.2 785 74.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1175.2 783 75.7
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1173.7 786 73.0
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1170.6 791 74.8
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1166.0 786 72.6
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1160.2 791 74.7
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1157.1 790 72.2
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1157.1 784 73.0
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1156.4 792 74.2
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 785 71.7
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1154.4 784 75.1
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 785 71.7
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 785 71.7
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1152.1 817 72.6
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1147.5 794 74.8
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1141.7 785 73.9
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1141.3 786 71.9
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1139.0 790 71.0
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1138.6 790 74.1
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1137.9 790 71.3
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1137.9 785 72.0
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1137.5 790 71.4
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1136.3 790 71.3
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1135.2 790 73.9
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1135.2 790 71.1
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1134.4 785 73.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1133.6 790 73.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1133.2 784 72.2
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1133.2 786 70.7
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1130.9 783 72.5
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1129.8 789 71.1
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1125.5 791 72.6
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1125.2 799 70.3
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1123.6 791 70.5
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1121.7 786 70.9
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1120.9 790 71.4
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1120.1 784 71.6
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1118.6 785 71.6
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1118.2 785 71.6
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1117.4 784 72.8
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1115.1 824 68.1
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1114.4 787 72.6
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1111.3 785 69.9
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1107.8 790 69.9
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1107.8 793 69.5
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1107.0 807 70.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1106.7 786 69.6
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1104.7 789 70.7
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1102.8 785 70.8
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1102.4 753 72.9
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1100.5 790 68.9
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1099.7 783 71.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1098.2 789 68.9
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1097.4 789 69.1
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1096.3 786 71.2
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1095.9 809 70.1
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1095.5 783 71.1
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1095.5 791 68.8
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1092.8 760 72.5
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1088.6 791 68.5
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1080.1 789 71.1
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1078.9 793 69.1
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1076.2 789 71.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1075.5 850 65.3
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 4.2e-310 1067.8 797 66.6
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 5.4e-310 1067.4 783 68.1
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.2e-309 1066.2 797 66.4
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 2.0e-309 1065.4 797 66.8
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 4.6e-309 1064.3 797 66.6
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 1.3e-308 1062.8 797 66.5
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 3.9e-308 1061.2 797 66.5
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 3.9e-308 1061.2 800 66.5
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 5.1e-308 1060.8 751 70.6
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 2.1e-306 1055.4 789 69.8
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 1.4e-305 1052.7 928 60.2
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 3.1e-305 1051.6 783 67.0
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 6.8e-305 1050.4 783 67.0
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 3.2e-302 1041.6 878 63.0
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 1.6e-301 1039.3 806 63.6
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 6.2e-298 1027.3 793 65.8
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 8.1e-298 1026.9 847 62.2
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 3.1e-297 1025.0 794 64.9
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 3.4e-296 1021.5 783 65.5
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 6.4e-295 1017.3 784 65.9
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 8.1e-290 1000.3 783 63.0
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.0e-284 983.4 814 63.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.1e-273 946.8 814 61.9
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 8.2e-266 920.6 838 61.7
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.5e-261 905.2 616 73.7
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 6.1e-261 904.4 715 68.4
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.1e-252 874.8 808 53.5
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 5.3e-249 864.8 672 67.1
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 8.5e-247 857.4 788 54.3
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.5e-246 855.9 802 53.6
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 4.0e-236 822.0 576 71.5
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 2.5e-214 749.6 768 47.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 6.8e-212 741.5 546 70.0
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 3.7e-186 656.0 871 41.7
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 9.6e-182 641.3 803 46.3
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.3e-174 616.3 481 63.8
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 6.9e-172 608.6 514 63.2
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.0e-171 607.1 450 68.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 3.8e-170 602.8 381 73.8
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 4.9e-170 602.4 480 61.0
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 9.3e-153 545.0 786 42.5
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.3e-151 540.4 461 58.8
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.3e-149 534.6 414 65.9
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.5e-137 493.8 327 72.8
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 1.3e-133 481.5 370 67.0
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.3e-132 476.1 378 63.2
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.2e-129 466.8 610 45.7
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.7e-85 321.6 215 71.2
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.3e-81 307.0 160 88.1
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 5.2e-79 300.1 390 48.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 4.9e-77 293.5 611 30.6
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 7.6e-70 269.6 643 28.8
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 7.6e-54 216.5 216 56.0
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.0e-37 162.9 124 62.1
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.9e-36 158.7 510 26.5
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.4e-31 142.5 120 57.5
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 4.5e-30 137.5 647 21.9
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.8e-29 134.4 92 66.3
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 8.5e-29 133.3 128 50.0
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.5e-28 131.7 115 55.7
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 5.7e-17 94.0 42 92.9
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 5.3e-07 60.8 48 58.3
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.5e-06 58.2 42 57.1


User provided reference genes

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