Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 6.0e-164 581.3 409 100.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.0e-83 314.7 367 64.3
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.2e-80 303.1 368 64.1
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.2e-80 301.6 369 61.5
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.6e-79 300.8 370 65.4
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.5e-79 299.7 365 58.9
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.5e-77 294.3 369 63.7
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.9e-77 293.9 370 64.1
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 7.3e-77 292.0 370 69.5
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.5e-77 291.6 371 60.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 3.6e-76 289.7 366 58.2
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 3.6e-76 289.7 371 65.2
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 3.6e-76 289.7 369 69.4
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.8e-75 287.3 368 64.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.2e-75 285.8 368 64.9
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.0e-74 283.9 365 54.0
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.7e-73 280.8 368 63.0
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-73 280.4 369 56.4
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 4.9e-73 279.3 368 64.9
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 8.3e-73 278.5 369 62.6
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.1e-72 276.2 370 67.3
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 6.0e-71 272.3 379 63.3
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.3e-70 271.2 369 59.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.3e-70 270.4 369 55.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 2.3e-70 270.4 369 71.8
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.9e-70 269.6 414 56.8
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.9e-70 269.6 414 56.8
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.1e-70 269.2 367 52.9
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.1e-70 269.2 366 56.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 5.6e-69 265.8 370 62.4
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 7.3e-69 265.4 376 58.5
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.2e-68 264.6 367 62.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.1e-68 263.8 364 61.0
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.1e-68 263.8 374 60.7
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.8e-68 263.5 373 61.9
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.2e-68 262.3 381 56.2
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 6.2e-68 262.3 384 57.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 6.2e-68 262.3 365 54.5
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 6.2e-68 262.3 365 54.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 8.1e-68 261.9 369 64.5
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 8.1e-68 261.9 367 56.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.4e-67 261.2 373 60.3
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 8.9e-67 258.5 368 58.2
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-66 258.1 368 55.2
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.4e-66 256.5 365 54.0
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.4e-66 256.1 364 57.7
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 4.4e-66 256.1 392 53.6
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.6e-66 255.4 368 51.4
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.3e-65 254.6 367 62.7
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.7e-65 254.2 366 49.7
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.9e-65 252.7 366 50.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 4.9e-65 252.7 367 54.2
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.4e-64 251.1 370 62.4
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.4e-64 251.1 366 55.7
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 5.4e-64 249.2 325 64.3
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 5.4e-64 249.2 367 51.2
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 7.1e-64 248.8 332 61.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 9.2e-64 248.4 364 56.6
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 9.2e-64 248.4 364 54.9
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 2.3e-62 243.8 404 57.4
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 2.5e-61 240.4 350 69.4
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 4.3e-61 239.6 377 58.9
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.6e-61 238.4 395 54.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.2e-60 238.0 376 50.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.2e-60 238.0 381 54.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.1e-60 237.3 373 60.1
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 2.8e-60 236.9 369 60.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 3.6e-60 236.5 369 61.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.7e-60 236.1 378 60.8
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 6.2e-60 235.7 370 60.8
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 8.1e-60 235.3 377 60.2
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.4e-59 233.8 370 57.6
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 3.1e-59 233.4 364 60.4
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.0e-59 233.0 378 59.5
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 5.2e-59 232.6 378 64.8
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-59 232.3 378 56.3
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 6.8e-59 232.3 380 65.8
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.5e-58 231.1 372 57.8
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.5e-58 231.1 380 60.5
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.0e-58 230.7 364 52.5
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.8e-58 229.2 378 60.1
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 5.8e-58 229.2 371 60.6
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 9.9e-58 228.4 370 55.1
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 9.9e-58 228.4 372 54.3
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 2.2e-57 227.3 379 57.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.2e-57 227.3 369 58.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.9e-57 226.9 368 52.7
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 4.9e-57 226.1 381 59.1
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 4.9e-57 226.1 369 56.6
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.1e-56 224.9 372 57.5
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 7.1e-56 222.2 372 59.4
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.6e-55 221.1 372 51.1
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.5e-53 214.5 373 63.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.1e-52 210.7 383 52.2
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 8.1e-52 208.8 333 58.3
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.4e-51 208.0 371 56.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 4.0e-51 206.5 377 56.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 9.0e-51 205.3 367 48.5
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.2e-50 204.9 389 53.5
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.6e-50 203.8 378 52.6
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 3.4e-50 203.4 366 54.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 5.8e-50 202.6 401 42.4
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.2e-49 200.7 368 46.5
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.9e-49 200.3 388 50.8
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-48 198.4 371 60.1
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.1e-47 194.1 216 62.5
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 4.6e-47 193.0 374 55.1
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 4.6e-47 193.0 371 57.1
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 6.0e-47 192.6 376 54.8
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 6.0e-47 192.6 376 54.8
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 3.0e-46 190.3 374 54.8
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.9e-46 189.9 390 43.8
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 5.1e-46 189.5 376 54.5
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.6e-45 185.3 391 44.5
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.6e-45 185.3 391 44.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 8.1e-44 182.2 370 57.8
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 3.1e-43 180.3 371 49.6
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.3e-41 174.9 370 52.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 8.4e-41 172.2 366 39.1
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.4e-40 171.4 384 47.4
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 4.2e-40 169.9 375 53.3
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.1e-40 169.1 239 52.7
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.5e-39 166.8 373 50.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 6.0e-39 166.0 373 49.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 5.6e-37 159.5 364 57.7
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 7.4e-37 159.1 372 47.8
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 2.8e-36 157.1 367 43.3
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 7.1e-32 142.5 367 35.7
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.7e-31 140.6 382 43.5
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 1.9e-29 134.4 364 46.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 7.4e-29 132.5 221 50.7
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.4e-29 132.5 371 36.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.4e-29 132.5 371 36.4
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-28 131.7 362 47.5
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.3e-28 131.7 362 47.5
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-28 131.7 365 36.7
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-28 131.3 371 36.4
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.8e-28 130.6 178 51.7
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.8e-27 127.9 371 36.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.8e-27 127.9 216 47.2
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.8e-27 127.9 662 29.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 4.1e-27 126.7 367 34.3
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 5.3e-27 126.3 206 46.6
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 7.2e-24 115.9 215 43.7
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 7.9e-23 112.5 177 66.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 9.7e-21 105.5 189 48.1
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 9.7e-21 105.5 223 35.4
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.6e-18 97.4 56 82.1
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-17 95.5 51 86.3
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.7e-17 94.7 56 80.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.1e-14 83.2 61 59.0
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 4.8e-12 76.6 138 44.9
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 8.2e-12 75.9 173 42.8
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-11 75.1 211 39.8
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.5e-10 71.6 185 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 8.5e-09 65.9 223 36.8
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.9e-08 64.7 57 78.9
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.5e-08 63.2 82 51.2
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.0e-06 57.4 184 39.1


User provided reference genes

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