Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 7.0e-155 550.8 331 100.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 5.0e-84 315.5 292 76.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.2e-82 310.8 289 76.1
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.7e-82 309.7 301 71.1
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.6e-82 309.3 301 74.8
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 6.1e-82 308.5 289 75.4
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.8e-78 297.0 299 70.6
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 4.1e-78 295.8 286 73.4
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 5.3e-78 295.4 246 69.5
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 7.0e-78 295.0 299 70.2
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.0e-77 293.5 287 73.9
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.5e-77 292.4 290 70.3
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.5e-77 292.4 296 69.9
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 4.5e-77 292.4 290 67.2
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.3e-76 290.8 250 72.0
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.7e-76 290.4 183 83.1
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 3.2e-75 286.2 306 67.0
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.6e-74 283.9 292 68.5
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.1e-74 283.5 286 71.3
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.6e-74 282.7 305 64.3
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 3.6e-74 282.7 286 72.4
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 4.7e-74 282.3 176 84.7
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 4.7e-74 282.3 292 68.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 6.1e-74 282.0 290 71.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 6.1e-74 282.0 290 71.4
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.0e-73 281.2 294 71.4
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 3.0e-73 279.6 183 80.9
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 4.0e-73 279.3 285 71.2
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 5.2e-73 278.9 283 71.7
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.2e-73 278.9 286 67.8
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.7e-73 278.5 182 81.9
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.1e-72 277.7 285 62.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.0e-72 276.9 287 72.1
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 2.6e-72 276.6 237 72.2
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.6e-72 276.6 183 80.9
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.3e-72 276.2 183 81.4
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 7.5e-72 275.0 183 80.9
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.5e-72 275.0 185 79.5
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.3e-71 274.2 274 68.2
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.7e-71 273.9 287 69.0
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.2e-71 273.5 231 68.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.2e-71 273.5 172 82.0
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.2e-71 273.5 185 80.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.7e-71 272.7 292 62.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.8e-71 272.3 292 66.8
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.8e-71 272.3 267 69.3
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.8e-71 272.3 267 69.3
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.1e-70 271.2 293 71.7
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.4e-70 270.8 176 80.7
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.4e-70 270.8 175 82.3
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 5.3e-70 268.9 165 85.5
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 5.3e-70 268.9 176 81.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.3e-70 268.9 193 75.6
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.0e-70 268.5 186 76.9
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 7.0e-70 268.5 186 76.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 9.1e-70 268.1 153 88.9
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.2e-69 267.7 153 88.2
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.6e-69 267.3 171 81.3
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-69 266.2 181 77.9
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.5e-69 266.2 181 77.9
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.5e-69 266.2 181 77.9
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.5e-69 265.8 167 82.6
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 4.5e-69 265.8 163 82.2
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.5e-69 265.8 165 84.2
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 5.9e-69 265.4 178 78.7
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 5.9e-69 265.4 178 78.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.9e-69 265.4 244 68.9
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 7.7e-69 265.0 185 77.3
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.0e-68 264.6 238 68.5
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.0e-68 264.6 185 76.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.3e-68 264.2 163 82.2
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.7e-68 263.8 185 76.2
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-68 263.5 181 77.3
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.2e-68 263.5 183 78.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.2e-68 263.5 171 79.5
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-68 263.1 299 62.2
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.8e-68 262.7 286 67.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 5.0e-68 262.3 186 76.3
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 5.0e-68 262.3 288 68.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 5.0e-68 262.3 151 88.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 6.5e-68 261.9 151 88.1
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 8.5e-68 261.5 151 88.1
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 8.5e-68 261.5 178 78.1
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.5e-67 260.8 179 77.7
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.9e-67 260.4 150 88.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.9e-67 260.4 292 66.1
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.5e-67 260.0 178 77.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.5e-67 260.0 178 77.5
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.5e-67 260.0 151 88.1
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.2e-67 259.6 191 73.8
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.2e-67 259.2 167 81.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 4.2e-67 259.2 184 75.5
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 5.5e-67 258.8 249 65.5
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.2e-66 257.7 235 69.8
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.1e-66 256.9 288 62.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.6e-66 256.1 235 69.4
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 6.1e-66 255.4 189 73.5
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 8.0e-66 255.0 152 86.2
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 3.0e-65 253.1 289 63.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.0e-65 252.7 299 64.2
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.2e-65 252.3 179 74.9
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 8.8e-65 251.5 175 77.7
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 8.8e-65 251.5 252 61.9
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.5e-64 250.8 291 65.3
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.0e-64 250.4 274 60.2
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.6e-64 250.0 183 73.8
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.4e-64 249.6 153 83.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.4e-64 249.6 153 83.7
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.4e-64 249.2 294 66.7
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.3e-63 247.7 299 64.2
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.7e-63 247.3 293 64.2
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.7e-63 247.3 298 64.1
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.2e-63 246.9 297 64.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 4.8e-63 245.7 307 58.0
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.8e-63 245.7 286 65.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.1e-62 244.6 151 83.4
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 5.4e-62 242.3 139 87.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.1e-62 241.5 153 80.4
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 9.1e-62 241.5 296 62.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.2e-61 241.1 142 83.8
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.2e-61 241.1 184 71.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.2e-61 241.1 187 71.7
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.0e-61 240.4 152 82.2
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.0e-61 240.4 291 65.6
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.3e-60 237.7 301 60.8
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.3e-60 237.7 159 81.8
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.2e-60 236.9 167 76.6
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 3.8e-60 236.1 140 85.0
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-59 234.6 191 67.0
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 3.6e-58 229.6 151 80.8
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.0e-57 228.0 242 59.9
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-57 227.6 286 63.3
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-57 227.6 286 63.3
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.8e-57 227.3 184 70.7
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 9.8e-56 221.5 301 62.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.3e-55 221.1 134 82.8
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.7e-55 219.5 130 86.2
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.2e-53 214.5 242 56.6
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 6.6e-52 208.8 160 71.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 6.6e-52 208.8 122 86.9
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-48 198.0 151 71.5
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 7.5e-48 195.3 211 57.8
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.1e-46 191.4 253 59.7
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.6e-45 187.6 161 63.4
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 6.6e-44 182.2 184 59.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 7.3e-43 178.7 170 61.2
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.2e-42 175.6 123 74.0
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.3e-41 173.7 151 62.3
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 3.0e-36 156.8 282 50.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 9.5e-35 151.8 109 73.4
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.8e-34 150.2 181 51.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.3e-33 147.1 94 78.7
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.0e-33 146.4 188 51.1
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.0e-33 146.4 188 51.1
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.6e-32 143.7 193 49.2
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 7.8e-29 132.1 267 48.7
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.1e-27 128.3 136 52.9
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.1e-26 124.0 227 44.1
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.0e-17 93.2 53 83.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-15 87.8 78 64.1
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 4.9e-15 86.3 150 48.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.5e-13 80.1 50 80.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 3.0e-12 77.0 40 92.5
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.2e-07 60.8 62 62.9


User provided reference genes

Program Settings