Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 6.1e-143 510.8 249 100.0
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.9e-92 341.7 234 67.9
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.5e-90 335.5 235 68.9
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 7.8e-90 334.3 235 66.8
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.6e-89 331.3 235 66.8
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 1.6e-87 326.6 236 66.5
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.1e-87 326.2 235 64.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.1e-86 323.9 235 66.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.3e-86 322.8 236 64.0
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.9e-86 320.9 236 64.4
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 5.8e-85 318.2 235 63.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.8e-85 318.2 236 64.4
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 9.9e-85 317.4 235 63.0
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.2e-84 316.2 239 65.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.2e-84 316.2 239 65.3
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.9e-83 313.2 240 62.9
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 3.2e-83 312.4 235 62.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.1e-83 312.0 235 65.1
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 7.1e-83 311.2 235 62.6
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.2e-83 310.8 239 63.6
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 9.2e-83 310.8 235 63.4
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.6e-82 310.1 235 62.6
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.6e-82 310.1 243 60.5
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 4.6e-82 308.5 233 60.9
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 6.0e-82 308.1 235 60.9
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 6.0e-82 308.1 243 63.0
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.0e-81 307.4 237 62.4
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.7e-81 306.6 243 60.5
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.9e-81 305.4 245 60.4
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 5.1e-81 305.1 246 60.2
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 8.6e-81 304.3 243 62.6
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.1e-80 303.9 243 59.7
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.9e-80 303.1 236 63.1
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 7.3e-80 301.2 235 62.1
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.5e-80 300.8 238 61.3
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 9.5e-80 300.8 233 62.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-79 300.1 239 61.9
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.1e-79 299.7 238 61.3
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.6e-79 298.9 234 62.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 6.2e-79 298.1 246 60.2
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 6.2e-79 298.1 233 57.9
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 8.1e-79 297.7 245 59.2
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.8e-78 296.6 243 60.9
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 4.0e-78 295.4 246 58.9
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.0e-78 295.4 235 61.3
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 5.2e-78 295.0 235 62.6
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 5.2e-78 295.0 236 61.0
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.8e-78 294.7 236 60.6
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.8e-78 294.7 236 60.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 8.9e-78 294.3 237 60.3
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.2e-77 293.9 233 63.9
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.5e-77 293.5 236 59.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.5e-77 293.5 243 60.5
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.0e-77 293.1 248 60.5
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.6e-77 292.7 235 60.4
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.4e-77 292.4 248 60.5
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.9e-77 290.8 235 60.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-76 290.4 233 63.5
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.9e-76 289.3 233 63.5
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.8e-76 288.9 241 60.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.1e-75 287.3 235 59.6
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.4e-75 287.0 234 59.8
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-75 286.6 233 62.2
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.4e-75 286.2 239 58.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.2e-75 285.8 248 59.7
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 4.1e-75 285.4 235 57.9
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 7.1e-75 284.6 235 59.1
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 9.2e-75 284.3 246 58.5
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.2e-74 283.9 236 61.0
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.6e-74 283.5 249 57.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.7e-74 282.7 235 58.3
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.5e-74 282.3 237 58.2
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.5e-74 282.3 237 58.2
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.3e-73 280.4 240 60.0
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.7e-73 280.0 237 56.5
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.7e-73 280.0 244 59.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.7e-73 280.0 244 58.2
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.0e-73 279.3 236 57.6
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.0e-73 279.3 248 55.6
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 3.9e-73 278.9 249 55.8
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.1e-72 277.3 240 59.6
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.5e-72 276.9 235 57.4
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-72 276.6 216 63.0
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 2.5e-72 276.2 244 57.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.5e-72 276.2 244 56.6
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 3.3e-72 275.8 244 56.1
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 7.3e-72 274.6 233 56.2
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 1.2e-71 273.9 242 57.0
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.6e-71 273.5 233 58.4
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.6e-71 272.3 245 58.4
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 3.6e-71 272.3 240 58.3
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.7e-71 271.9 216 61.1
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 6.2e-71 271.6 241 58.5
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 8.1e-71 271.2 230 56.1
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.8e-70 270.0 245 56.7
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.8e-70 270.0 245 56.7
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.4e-70 269.6 203 63.5
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.1e-70 269.2 228 57.5
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.0e-70 268.9 249 55.8
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 4.0e-70 268.9 251 56.2
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 6.9e-70 268.1 237 57.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 6.9e-70 268.1 245 59.2
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.6e-69 264.6 240 55.0
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-68 263.5 238 56.3
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.8e-68 262.3 244 54.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 8.4e-68 261.2 239 55.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 8.4e-68 261.2 239 55.6
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.1e-67 260.8 241 56.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.1e-67 258.1 235 54.5
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 9.3e-67 257.7 224 56.2
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.1e-66 256.5 203 62.1
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.5e-66 255.8 237 54.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 4.6e-66 255.4 237 54.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 6.0e-66 255.0 237 52.7
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.0e-65 254.2 205 61.0
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 2.3e-65 253.1 237 54.0
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.3e-65 253.1 235 56.6
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.0e-65 252.7 228 55.3
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 3.9e-65 252.3 235 55.3
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 3.9e-65 252.3 235 55.3
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.1e-65 251.9 240 56.2
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.1e-65 251.9 237 53.6
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.1e-65 251.9 235 56.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 6.6e-65 251.5 249 52.2
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.7e-65 251.1 237 54.4
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.9e-64 250.0 235 54.0
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.9e-64 250.0 237 53.6
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 5.6e-64 248.4 240 52.1
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 9.6e-64 247.7 235 54.5
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.6e-63 246.9 234 53.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.6e-63 246.9 237 53.6
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.1e-62 244.2 241 51.9
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.1e-62 242.7 248 51.6
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.1e-62 242.7 248 51.6
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 5.3e-62 241.9 237 52.3
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.5e-61 240.4 235 50.2
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.5e-61 240.4 243 51.0
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.6e-61 239.6 239 51.0
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.2e-58 230.7 234 49.6
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.0e-57 227.6 253 48.2
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.3e-57 227.3 257 49.4
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 3.9e-57 225.7 235 52.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 5.1e-57 225.3 185 58.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 6.7e-57 224.9 234 47.9
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 8.7e-57 224.6 233 51.5
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.3e-56 222.6 242 49.2
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 7.4e-56 221.5 236 49.2
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.8e-55 219.5 231 48.1
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 3.1e-54 216.1 223 50.7
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.2e-53 214.2 209 51.2
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.9e-51 206.8 161 62.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 9.3e-51 204.5 185 58.4
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.8e-49 200.3 237 46.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.3e-48 196.1 163 58.3
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 7.4e-48 194.9 260 42.3
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.0e-46 189.1 238 45.8
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.6e-45 186.4 157 56.1
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 7.6e-45 184.9 261 40.6
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-44 184.5 163 54.6
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.3e-44 184.1 157 58.6
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.7e-41 171.8 201 47.8
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 4.5e-37 159.1 206 44.7
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.6e-34 150.6 133 54.9
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.1e-34 148.7 193 43.0
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 4.5e-29 132.5 116 58.6
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.9e-28 129.8 135 51.1
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.0e-28 129.0 107 57.9
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.5e-27 125.6 176 42.0
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.2e-27 125.2 93 65.6
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.4e-24 115.2 93 62.4
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 9.7e-24 114.8 118 50.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 2.4e-22 110.2 166 36.7
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 5.3e-22 109.0 134 47.0
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.6e-18 97.4 88 51.1
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 4.7e-18 95.9 89 55.1
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.8e-17 94.0 166 33.1
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 6.7e-17 92.0 74 59.5
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 4.8e-15 85.9 190 29.5
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.1e-14 84.7 80 55.0
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.6e-13 80.9 135 36.3
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.2e-12 77.0 96 41.7
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.8e-09 67.4 48 60.4
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 3.0e-09 66.6 174 27.0
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 4.4e-08 62.8 129 33.3


User provided reference genes

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