Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 3710.6 1909 100.0
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 3696.7 1934 98.7
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 3496.8 1912 94.5
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2568.9 1917 69.1
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2375.9 1920 63.6
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2364.7 1919 64.5
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2361.6 1924 63.4
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2350.5 1965 62.4
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2301.9 1926 62.6
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2301.9 1924 62.5
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2292.7 1921 62.0
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2266.9 1927 62.2
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2249.6 1926 61.4
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2241.1 1936 60.6
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2238.4 1923 60.4
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2213.7 1923 60.2
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2208.3 1923 60.7
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2200.6 1935 59.5
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2199.5 1906 61.3
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2184.5 1926 60.6
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2184.1 1923 60.6
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2174.1 1927 59.3
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2149.4 1924 58.9
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2140.2 1924 58.7
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2137.1 1924 58.6
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2127.8 1929 58.4
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2122.8 1961 57.7
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2120.5 1928 58.6
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2119.7 1920 58.3
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 2102.8 1924 58.2
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 2093.2 1922 57.4
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 2078.1 1928 57.1
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 2074.3 1923 57.7
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 2070.4 1929 57.1
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2063.1 1945 56.7
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2043.1 1926 57.2
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 2043.1 1974 55.8
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 2040.8 1926 56.8
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2039.6 1926 56.8
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2039.2 1927 56.8
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 2034.2 1930 56.9
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2033.1 1942 56.3
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2030.0 1919 56.8
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 2015.7 1948 56.3
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2013.4 2096 53.4
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 2008.8 1922 56.3
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1976.4 2043 53.2
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1960.3 1944 54.3
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1949.1 1925 54.1
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1946.0 2416 46.6
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1944.5 1926 53.8
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1939.9 1918 54.2
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1915.2 1801 56.6
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1905.2 1921 53.7
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1903.6 1921 53.6
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1901.7 1931 54.9
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1883.2 1863 53.9
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1874.0 1917 52.4
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1862.8 1929 53.4
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1857.8 1932 52.5
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1855.1 1935 52.1
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1851.3 1930 52.4
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1849.3 1940 52.0
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1845.1 1934 52.7
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1842.8 1916 52.2
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1828.1 1922 51.5
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1827.4 1918 51.5
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1826.6 1920 51.6
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1817.4 1921 51.6
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1806.6 1939 51.1
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1805.4 1928 51.0
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1804.6 1919 51.5
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1799.6 1927 51.3
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1799.3 1916 51.6
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1798.9 1916 51.4
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1793.5 1931 51.1
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1788.5 1926 51.6
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1786.2 1970 50.0
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1785.8 1837 52.6
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1785.4 1915 50.8
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1785.0 1935 50.6
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1781.1 1918 50.9
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1777.7 1915 50.8
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1770.4 1931 50.5
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1758.4 1922 50.5
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1754.2 1932 51.4
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1749.2 1829 52.1
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1729.1 1879 51.0
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1706.8 1935 50.1
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1673.3 1977 47.6
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1664.0 1867 49.0
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1660.6 1914 48.9
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1603.2 1329 62.5
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1553.5 1962 44.6
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1537.7 1706 49.8
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1503.0 1565 52.7
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1483.0 1220 62.9
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1404.0 1946 41.6
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1400.2 1958 42.1
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1317.0 1961 40.2
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1193.3 888 67.7
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1162.9 1107 54.2
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 7.6e-302 1041.6 2082 33.5
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 5.3e-295 1018.8 1693 37.9
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 7.6e-294 1015.0 1143 50.3
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 3.1e-287 993.0 2052 33.4
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.0e-261 908.3 2005 32.3
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 7.2e-260 902.1 1105 45.4
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 8.2e-248 862.1 1930 31.4
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.7e-213 748.0 774 54.8
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.7e-174 617.8 909 39.5
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.9e-133 481.1 707 41.6
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 3.2e-74 285.4 258 56.2
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 4.3e-63 248.4 173 74.0
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 5.6e-63 248.1 565 32.2
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.4e-61 243.4 177 75.1
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 2.9e-51 209.1 221 44.8
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.9e-50 206.5 221 54.8
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 4.3e-47 195.3 206 46.6
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 5.0e-43 181.8 166 54.2
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-42 178.7 644 26.1
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 2.3e-40 172.9 141 68.8
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 5.5e-34 151.8 360 30.0
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.4e-32 147.1 98 70.4
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 6.9e-29 134.8 214 33.2
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 7.2e-26 124.8 195 37.9
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 2.1e-25 123.2 179 38.0
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 2.7e-25 122.9 95 62.1
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 8.2e-22 111.3 127 53.5
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 3.1e-21 109.4 107 60.7
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 7.0e-21 108.2 77 67.5
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 2.7e-17 96.3 103 54.4
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 1.4e-16 94.0 126 38.9
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.6e-12 80.5 107 39.3
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.2e-11 76.6 107 39.3
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 3.2e-10 72.8 87 46.0


User provided reference genes

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