Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra17G0116200 Salix brachista HOM05D005384 ORTHO05D006477 2.7e-243 845.1 487 100.0
Sabra17G0113100 Salix brachista HOM05D005384 ORTHO05D006477 6.8e-199 697.6 447 87.7
Sabra17G0116500 Salix brachista HOM05D005384 ORTHO05D006477 2.8e-192 675.6 508 77.6
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 1.1e-169 600.5 445 80.2
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 7.7e-158 561.2 448 71.7
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 1.3e-157 560.5 448 71.4
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 3.1e-127 459.5 463 59.4
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 1.6e-126 457.2 457 60.4
Actinidia10880 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.1e-124 451.1 450 59.6
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 1.1e-124 451.1 412 63.3
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 2.1e-123 446.8 453 60.9
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 1.4e-122 444.1 454 59.9
COL.COLO4_24446 Corchorus olitorius HOM05D005384 ORTHO05D006477 7.5e-121 438.3 455 59.1
RcHm_v2.0_Chr1g0329501 Rosa chinensis HOM05D005384 ORTHO05D006477 1.2e-118 431.0 414 62.8
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 1.7e-117 427.2 453 57.4
Duzib133G1182 Durio zibethinus HOM05D005384 ORTHO05D006477 5.0e-117 425.6 465 56.8
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 2.5e-116 423.3 413 61.7
MD02G1270000 Malus domestica HOM05D005384 ORTHO05D006477 5.6e-116 422.2 480 58.3
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 9.5e-116 421.4 460 57.6
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 9.5e-116 421.4 413 61.5
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 2.1e-115 420.2 460 57.6
FAN06G1991 Fragaria x ananassa HOM05D005384 ORTHO05D006477 1.0e-114 417.9 414 62.6
FvH4_7g04410 Fragaria vesca HOM05D005384 ORTHO05D006477 1.4e-114 417.5 414 62.6
Thecc.04G058100 Theobroma cacao HOM05D005384 ORTHO05D006477 1.4e-114 417.5 415 63.4
FAN10G2966 Fragaria x ananassa HOM05D005384 ORTHO05D006477 4.0e-114 416.0 414 61.4
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 5.7e-113 412.1 414 63.0
FAN03G3298 Fragaria x ananassa HOM05D005384 ORTHO05D006477 5.7e-113 412.1 414 61.1
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 2.9e-112 409.8 414 59.9
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 6.4e-112 408.7 414 63.3
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 1.7e-109 400.6 414 58.5
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 5.0e-109 399.1 414 58.7
VMungo0251G2756 Vigna mungo HOM05D005384 ORTHO05D006477 1.1e-108 397.9 406 59.6
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 1.5e-108 397.5 453 55.0
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 3.3e-108 396.4 411 62.0
Glyma.16G102300 Glycine max HOM05D005384 ORTHO05D006477 7.3e-108 395.2 411 60.8
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 2.1e-107 393.7 417 58.3
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.0e-106 391.3 418 59.1
Lj3C397G6 Lonicera japonica HOM05D005384 ORTHO05D006477 5.2e-106 389.0 421 60.8
CANSAT25G0269 Cannabis sativa HOM05D005384 ORTHO05D006477 6.8e-106 388.7 394 60.9
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 4.4e-105 386.0 413 60.3
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 5.8e-105 385.6 451 56.3
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 7.5e-105 385.2 412 59.7
Lj2A247G82 Lonicera japonica HOM05D005384 ORTHO05D006477 2.9e-104 383.3 421 59.6
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 3.7e-104 382.9 411 56.4
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 1.1e-103 381.3 411 58.6
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 9.2e-103 378.3 411 58.4
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 1.6e-102 377.5 411 58.2
Phvul.003G273500 Phaseolus vulgaris HOM05D005384 ORTHO05D006477 3.5e-102 376.3 411 56.7
CAN.G572.37 Capsicum annuum HOM05D005384 ORTHO05D006477 7.8e-102 375.2 411 57.4
Peaxi162Scf00084g00818 Petunia axillaris HOM05D005384 ORTHO05D006477 7.8e-102 375.2 410 55.6
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 1.3e-101 374.4 460 55.0
Ciclev10010959m.g Citrus clementina HOM05D005384 ORTHO05D006477 1.7e-101 374.0 413 57.1
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 1.5e-100 370.9 430 57.4
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 3.3e-100 369.8 413 57.9
Aqoxy2G03702_Aqoxy2G03703 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 4.3e-100 369.4 430 57.4
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 5.6e-100 369.0 411 57.4
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 9.5e-100 368.2 411 58.4
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 2.8e-99 366.7 396 57.8
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 1.8e-98 364.0 411 55.7
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 1.5e-97 360.9 412 55.8
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 3.4e-97 359.8 409 57.2
TAR629G1600 Trochodendron aralioides HOM05D005384 ORTHO05D006477 3.4e-97 359.8 384 59.1
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 7.5e-97 358.6 454 50.9
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 7.5e-97 358.6 410 57.3
EL10Ac8g19736 Beta vulgaris HOM05D005384 ORTHO05D006477 9.9e-97 358.2 411 55.2
MD00G1152000 Malus domestica HOM05D005384 ORTHO05D006477 1.7e-96 357.5 364 63.5
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 3.7e-96 356.3 414 57.0
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 4.9e-96 355.9 414 57.0
AUR62030216 Chenopodium quinoa HOM05D005384 ORTHO05D006477 4.1e-95 352.8 411 54.5
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 4.1e-95 352.8 455 50.8
TAR636G3654 Trochodendron aralioides HOM05D005384 ORTHO05D006477 1.6e-94 350.9 384 56.5
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 2.3e-93 347.1 415 57.6
Gohir.D08G048500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 2.3e-93 347.1 410 56.1
Oeu024119.2 Olea europaea HOM05D005384 ORTHO05D006477 8.6e-93 345.1 410 57.8
Gohir.A08G038300 Gossypium hirsutum HOM05D005384 ORTHO05D006477 1.1e-92 344.7 410 56.1
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 1.5e-92 344.4 410 56.3
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 1.5e-92 344.4 414 55.8
Gorai.004G048000 Gossypium raimondii HOM05D005384 ORTHO05D006477 7.3e-92 342.0 409 56.2
AUR62027521 Chenopodium quinoa HOM05D005384 ORTHO05D006477 2.8e-91 340.1 413 56.4
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 2.2e-88 330.5 409 52.3
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 1.3e-85 321.2 414 52.4
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 3.3e-84 316.6 403 55.3
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 7.3e-84 315.5 413 52.3
HPP92_022596 Vanilla planifolia HOM05D005384 ORTHO05D006477 1.2e-83 314.7 411 49.9
Os02g0167500 Oryza sativa ssp. japonica HOM05D005384 ORTHO05D006477 2.1e-83 313.9 416 50.0
HanXRQChr17g0535751 Helianthus annuus HOM05D005384 ORTHO05D006477 1.1e-82 311.6 411 53.0
Zm00001eb306360 Zea mays HOM05D005384 ORTHO05D006477 1.4e-82 311.2 412 49.8
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 1.2e-81 308.1 421 52.0
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 1.4e-79 301.2 367 54.0
Atru.chr1.2109 Acer truncatum HOM05D005384 ORTHO05D006477 5.6e-76 289.3 373 51.7
Gohir.A12G052500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 5.3e-74 282.7 279 60.2
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 1.7e-72 277.7 410 48.0
CiPaw.03G076200 Carya illinoinensis HOM05D005384 ORTHO05D006477 6.4e-72 275.8 250 64.4
Dinv05843 Davidia involucrata HOM05D005384 ORTHO05D006477 1.4e-71 274.6 293 58.4
Aa31LG10G6030 Aethionema arabicum HOM05D005384 ORTHO05D006477 7.9e-70 268.9 410 46.6
Potri.017G138401 Populus trichocarpa HOM05D005384 ORTHO05D006477 9.6e-68 261.9 228 78.5
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 2.1e-67 260.8 409 45.0
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 4.8e-67 259.6 411 46.2
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 3.8e-64 250.0 410 45.4
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 4.9e-64 249.6 408 44.9
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 6.4e-64 249.2 408 44.6
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 8.4e-64 248.8 406 43.6
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 1.4e-63 248.1 408 43.6
CsaV3_5G020310 Cucumis sativus L. HOM05D005384 ORTHO05D006477 5.5e-63 246.1 244 61.9
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 6.0e-62 242.7 401 46.9
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 7.9e-62 242.3 406 42.4
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 1.3e-61 241.5 406 44.3
Psat4g111160 Pisum sativum HOM05D005384 ORTHO05D006477 1.1e-58 231.9 294 56.1
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 2.6e-57 227.3 410 41.0
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 2.2e-56 224.2 408 42.4
Cpa.g.sc765.1 Carica papaya HOM05D005384 ORTHO05D006477 4.9e-56 223.0 408 42.6
Aa31LG10G8990 Aethionema arabicum HOM05D005384 ORTHO05D006477 6.5e-56 222.6 394 42.4
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 1.5e-49 201.4 200 60.0
Mapoly0005s0121 Marchantia polymorpha HOM05D005384 ORTHO05D006477 2.7e-46 190.7 409 39.1
Zm00001eb361710 Zea mays HOM05D005384 ORTHO05D006477 6.9e-42 176.0 254 49.2
AagrBONN_evm.TU.Sc2ySwM_228.1178 Anthoceros agrestis HOM05D005384 ORTHO05D006477 7.2e-39 166.0 426 34.7
Actinidia31471 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.6e-38 164.9 194 52.6
Pp3c10_21700 Physcomitrium patens HOM05D005384 ORTHO05D006477 5.7e-36 156.4 417 34.1
Pp3c20_21810 Physcomitrium patens HOM05D005384 ORTHO05D006477 2.0e-33 147.9 426 33.3
CDE06G0914 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 7.4e-28 129.4 201 51.7
Gohir.A12G052600 Gossypium hirsutum HOM05D005384 ORTHO05D006477 1.7e-24 118.2 118 61.0
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 2.2e-24 117.9 203 41.4
Lsat_1_v5_gn_6_25780 Lactuca sativa HOM05D006336 ORTHO05D007819 9.7e-20 102.4 142 49.3
TPR.G28960 Trifolium pratense HOM05D005384 ORTHO05D006477 9.7e-20 102.4 135 56.3
MD00G1151900 Malus domestica HOM05D005384 ORTHO05D006477 2.7e-14 84.3 52 76.9
Lsat_1_v5_gn_6_58121 Lactuca sativa HOM05D000234 ORTHO05D000335 2.2e-11 74.7 94 54.3
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.3e-08 65.5 48 68.8


User provided reference genes

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