Gene: AT3G54230

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54230
  • Transcript Identifier AT3G54230.3
  • Gene Type Coding gene
  • Location Chr3 : 20075187-20080142 : positive

Gene Family Information

  • ID HOM05D005384
  • #Genes/#Species 141/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54230.3
  • symbol SUA
  • uniprot F4JCU0

Descriptions

  • Description suppressor of abi3-5
  • Computational description suppressor of abi3-5 (SUA); FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 996294 Blast hits to 498601 proteins in 22091 species: Archae - 21896; Bacteria - 611740; Metazoa - 183692; Fungi - 26269; Plants - 56661; Viruses - 72133; Other Eukaryotes - 23903 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IMP
Gene OntologymRNA processing1
GO:0000398
IMP
IBA
Gene OntologymRNA splicing, via spliceosome1 2
GO:0043484
IMP
Gene Ontologyregulation of RNA splicing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001876 Zinc finger, RanBP2-type
IPR041591 OCRE domain
IPR035623 SUA-like, OCRE domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR000467 G-patch domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated