Gene: Sopen08g025890
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen08g025890
- Transcript Identifier Sopen08g025890.1
- Gene Type Coding gene
- Location Spenn-ch08 : 65646565-65656322 : positive
Gene Family Information
- ID HOM05D005384
- #Genes/#Species 141/88
- Phylogenetic origin
- ID ORTHO05D006477
- #Genes/#Species 142/88
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen08g025890.1
Descriptions
- Description Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5. Controls alternative splicing of the developmental regulator ABI3. | suppressor of abi3-5 (SUA) | FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , D111/G-patch , Zinc finger, RanBP2-type | BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 .
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043484 | ISO | PLAZA Integrative Orthology | regulation of RNA splicing | AT3G54230 |
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT3G54230 |
| GO:0000398 | ISO | PLAZA Integrative Orthology | mRNA splicing, via spliceosome | AT3G54230 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G54230 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G54230 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR035623 | SUA-like, OCRE domain |
| IPR000467 | G-patch domain |
| IPR036443 | Zinc finger, RanBP2-type superfamily |
| IPR041591 | OCRE domain |
| IPR035979 | RNA-binding domain superfamily |
| IPR001876 | Zinc finger, RanBP2-type |
| IPR000504 | RNA recognition motif domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |