Gene: Potri.017G138500
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.017G138500
- Transcript Identifier Potri.017G138500.10
- Gene Type Coding gene
- Location Chr17 : 13979987-13988103 : negative
Gene Family Information
- ID HOM05D005384
- #Genes/#Species 141/88
- Phylogenetic origin
- ID ORTHO05D006477
- #Genes/#Species 142/88
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- id Potri.017G138500.v4.1
- pacid 42814226
- synonym POPTR_0017s02120
Descriptions
- Description K13094 - RNA-binding protein 5/10 (RBM5_10)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043484 | ISO | PLAZA Integrative Orthology | regulation of RNA splicing | AT3G54230 |
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT3G54230 |
| GO:0000398 | ISO | PLAZA Integrative Orthology | mRNA splicing, via spliceosome | AT3G54230 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G54230 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G54230 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR041591 | OCRE domain |
| IPR035623 | SUA-like, OCRE domain |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR000504 | RNA recognition motif domain |
| IPR036443 | Zinc finger, RanBP2-type superfamily |
| IPR001876 | Zinc finger, RanBP2-type |
| IPR000467 | G-patch domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |