Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.1e-114 417.2 305 100.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 7.6e-79 298.1 265 80.8
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.6e-75 285.0 253 83.8
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.1e-64 249.6 161 87.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 7.6e-63 245.0 184 73.4
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.2e-62 243.4 153 85.6
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 3.8e-62 242.7 180 72.8
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.9e-62 242.3 129 94.6
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.4e-62 241.5 156 82.7
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.1e-61 241.1 160 80.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 2.4e-61 240.0 130 93.1
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.4e-61 240.0 130 93.1
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.2e-61 239.2 155 80.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 4.2e-61 239.2 155 80.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 5.5e-61 238.8 159 80.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.3e-61 238.0 130 93.1
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 9.3e-61 238.0 130 93.1
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 9.3e-61 238.0 130 93.1
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 9.3e-61 238.0 130 91.5
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 9.3e-61 238.0 130 93.1
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 9.3e-61 238.0 130 93.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-60 237.7 130 93.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.2e-60 237.7 130 93.1
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.2e-60 237.7 156 80.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-60 237.3 130 93.1
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-60 237.3 130 93.1
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.6e-60 237.3 130 93.1
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.6e-60 237.3 246 59.3
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.1e-60 236.9 130 90.8
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.1e-60 236.9 185 70.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 2.7e-60 236.5 258 68.2
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.7e-60 236.5 130 90.8
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.7e-60 236.5 130 90.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-60 236.1 130 92.3
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 4.6e-60 235.7 182 70.9
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 4.6e-60 235.7 185 71.9
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 6.0e-60 235.3 254 69.3
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 6.0e-60 235.3 130 90.8
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.9e-60 235.0 130 90.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 7.9e-60 235.0 130 92.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 7.9e-60 235.0 161 78.9
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.0e-59 234.6 130 90.8
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-59 234.6 130 91.5
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.0e-59 234.6 130 91.5
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.0e-59 234.6 130 91.5
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.0e-59 234.6 254 71.3
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-59 234.2 163 78.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-59 234.2 163 78.5
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.3e-59 234.2 131 91.6
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.3e-59 234.2 131 91.6
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.8e-59 233.8 253 66.8
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.8e-59 233.8 130 91.5
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.9e-59 232.6 188 73.9
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.9e-59 232.6 251 70.1
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.9e-59 232.6 130 91.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 6.7e-59 231.9 186 68.8
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 8.7e-59 231.5 130 90.0
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 8.7e-59 231.5 130 90.0
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 8.7e-59 231.5 131 91.6
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 8.7e-59 231.5 130 89.2
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-58 231.1 131 90.8
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.1e-58 231.1 130 90.0
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.5e-58 230.7 159 76.1
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.5e-58 230.7 163 77.9
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.9e-58 230.3 183 71.0
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.5e-58 229.9 182 69.8
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 2.5e-58 229.9 190 70.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.5e-58 229.9 184 70.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.3e-58 229.6 131 90.1
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.3e-58 229.6 160 76.9
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 4.3e-58 229.2 130 90.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.6e-58 228.8 130 89.2
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.6e-58 228.8 153 79.1
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.4e-58 228.4 131 89.3
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 9.6e-58 228.0 131 87.8
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 9.6e-58 228.0 130 88.5
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 9.6e-58 228.0 160 78.1
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.3e-57 227.6 132 89.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.3e-57 227.6 254 75.6
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.3e-57 227.6 159 77.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.6e-57 227.3 159 76.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.8e-57 226.5 132 89.4
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.8e-57 226.5 130 89.2
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.2e-57 224.9 197 67.5
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.1e-56 224.6 131 86.3
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.1e-56 224.6 131 88.5
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.4e-56 224.2 152 77.6
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.4e-56 224.2 152 77.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.8e-56 223.8 187 72.7
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.4e-56 223.4 135 85.9
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.4e-56 223.4 135 85.9
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.4e-56 223.4 163 75.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.0e-56 222.6 187 71.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 4.0e-56 222.6 157 76.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 9.0e-56 221.5 160 77.5
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 9.0e-56 221.5 131 87.8
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.5e-55 220.7 153 76.5
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-55 220.7 153 76.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.0e-55 220.3 153 75.8
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.0e-55 220.3 153 75.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.0e-55 220.3 153 75.8
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 2.6e-55 219.9 130 86.2
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 5.8e-55 218.8 130 86.2
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 5.8e-55 218.8 133 88.0
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.3e-54 217.6 131 85.5
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.7e-54 217.2 160 74.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.9e-54 216.5 156 74.4
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 8.4e-54 214.9 268 55.6
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 8.4e-54 214.9 130 85.4
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 8.4e-54 214.9 257 61.9
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.1e-53 214.5 135 81.5
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.4e-53 214.2 130 83.1
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.4e-53 214.2 130 83.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.4e-53 214.2 257 61.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.9e-53 213.8 131 84.0
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.2e-53 213.0 130 83.1
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.2e-53 212.6 181 67.4
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.2e-53 212.6 132 82.6
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 4.2e-53 212.6 132 82.6
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.2e-53 212.6 132 82.6
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.1e-52 210.3 130 83.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.7e-52 209.9 130 82.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.0e-51 206.5 128 82.0
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.9e-51 206.1 190 66.8
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 6.7e-51 205.3 182 64.3
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.1e-50 204.5 131 82.4
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.5e-50 204.1 121 87.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.5e-50 203.4 130 80.0
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 4.3e-50 202.6 130 79.2
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.3e-49 201.1 154 72.7
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.1e-49 200.3 115 87.8
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.8e-48 197.2 126 80.2
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 5.3e-48 195.7 141 76.6
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-47 194.5 116 87.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.5e-47 194.1 131 77.1
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.3e-46 191.0 260 62.3
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 3.8e-46 189.5 131 76.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.2e-45 186.4 120 80.8
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 7.2e-45 185.3 130 73.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 9.3e-45 184.9 109 88.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.9e-42 177.2 182 59.9
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.9e-42 177.2 182 59.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.2e-39 167.9 130 66.2
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.5e-37 160.2 164 59.1
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.2e-37 159.8 130 68.5
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 6.1e-36 155.6 130 66.2
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 7.9e-36 155.2 94 86.2
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-34 151.4 108 74.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.1e-32 144.8 131 61.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 5.5e-29 132.5 130 58.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 3.6e-28 129.8 93 73.1
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.3e-27 127.1 78 80.8
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.2e-25 120.6 158 50.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.2e-25 118.6 182 45.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.2e-25 118.6 182 45.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.4e-24 117.1 156 49.4
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.6e-23 113.6 130 50.8
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.7e-19 99.0 90 63.3
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.1e-13 81.6 50 78.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.0e-11 75.1 63 65.1
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-11 74.7 39 89.7
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.0e-11 73.2 37 89.2


User provided reference genes

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