Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-116 423.3 206 100.0
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.7e-106 389.4 242 81.8
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 8.4e-106 387.1 239 82.0
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.5e-99 366.3 236 79.2
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.8e-82 308.5 235 68.1
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.5e-75 286.6 241 61.8
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.4e-75 285.4 241 61.8
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.3e-74 283.5 240 61.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 6.5e-74 281.2 244 59.4
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 4.2e-73 278.5 243 60.5
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 5.5e-73 278.1 244 60.2
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.5e-73 278.1 244 60.2
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.1e-72 276.2 244 60.2
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 2.7e-72 275.8 244 57.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 6.1e-72 274.6 241 59.8
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.0e-71 273.9 236 61.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.3e-71 273.5 241 60.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 3.0e-71 272.3 245 58.8
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 5.1e-71 271.6 245 59.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.7e-71 270.8 237 59.9
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.8e-69 265.8 236 59.3
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 3.7e-69 265.4 240 57.5
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.1e-68 262.3 241 54.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 5.9e-67 258.1 251 53.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 5.9e-67 258.1 242 56.6
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 7.7e-67 257.7 239 56.9
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.3e-66 256.9 235 57.4
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.3e-66 256.9 242 56.2
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.2e-66 256.1 245 57.6
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 3.8e-66 255.4 239 56.9
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 3.8e-66 255.4 236 56.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.5e-66 254.2 241 56.0
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.1e-65 253.8 235 56.6
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.9e-65 253.1 239 55.6
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.9e-65 253.1 236 57.2
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.9e-65 253.1 240 55.4
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.5e-65 252.7 242 56.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 9.4e-65 250.8 234 56.8
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.2e-64 250.4 234 57.3
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.6e-64 250.0 239 55.6
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 2.1e-64 249.6 241 56.0
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 4.6e-64 248.4 238 54.2
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 7.9e-64 247.7 243 53.1
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.0e-63 247.3 240 54.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.4e-63 246.9 235 54.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-63 246.9 241 55.6
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.4e-63 246.9 218 57.8
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.8e-63 246.5 243 54.3
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.3e-63 246.1 235 55.3
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 3.0e-63 245.7 240 53.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.0e-63 245.7 242 52.1
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.7e-63 244.6 241 54.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 6.7e-63 244.6 244 54.1
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 8.8e-63 244.2 231 56.3
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.1e-62 243.8 244 53.7
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-62 243.0 241 55.2
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.6e-62 242.7 239 56.5
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.7e-62 241.5 242 53.3
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 7.4e-62 241.1 232 54.7
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.4e-62 241.1 232 54.7
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 9.7e-62 240.7 234 55.1
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 9.7e-62 240.7 238 56.3
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 9.7e-62 240.7 240 54.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.3e-61 240.4 241 53.9
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.3e-61 240.4 241 54.4
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.7e-61 240.0 244 53.7
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 2.8e-61 239.2 238 53.8
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-61 239.2 241 53.9
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 2.8e-61 239.2 217 58.5
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.7e-61 238.8 238 54.6
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 6.3e-61 238.0 238 53.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 6.3e-61 238.0 233 54.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 8.2e-61 237.7 238 52.9
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 8.2e-61 237.7 238 52.9
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.4e-60 236.9 234 55.1
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.8e-60 236.5 237 54.4
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.8e-60 236.5 237 54.4
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.4e-60 236.1 255 51.8
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.4e-60 236.1 240 53.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 5.3e-60 235.0 238 53.4
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.5e-59 233.4 239 52.7
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.5e-59 233.4 244 52.9
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.5e-59 233.4 240 52.5
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.0e-59 233.0 240 53.3
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 2.0e-59 233.0 241 53.9
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 4.5e-59 231.9 239 52.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.9e-59 231.5 243 51.9
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 5.9e-59 231.5 241 53.9
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 7.7e-59 231.1 252 52.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 7.7e-59 231.1 252 52.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 7.7e-59 231.1 238 52.5
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-58 230.7 241 52.7
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-58 230.7 241 52.7
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.2e-58 229.6 256 50.0
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 5.0e-58 228.4 238 52.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 5.0e-58 228.4 238 52.1
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 5.0e-58 228.4 235 52.8
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-57 227.3 243 51.9
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.1e-57 227.3 242 52.1
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.1e-57 227.3 241 53.5
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.4e-57 226.9 236 50.8
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.5e-57 226.1 238 51.7
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.2e-57 225.3 216 57.4
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.5e-57 224.9 247 51.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.5e-57 224.9 247 51.0
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 7.2e-57 224.6 234 52.1
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 9.4e-57 224.2 239 52.3
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.6e-56 223.4 227 53.7
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 3.6e-56 222.2 234 52.1
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.9e-56 221.1 235 51.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.9e-56 221.1 227 52.9
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 1.4e-55 220.3 240 51.7
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.8e-55 219.9 228 51.8
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 5.2e-55 218.4 237 48.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 5.2e-55 218.4 239 51.0
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.7e-55 218.0 242 50.0
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.7e-55 218.0 242 50.0
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 6.7e-55 218.0 229 49.8
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 1.5e-54 216.9 193 59.6
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.4e-54 215.3 247 50.6
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.4e-54 215.3 242 49.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 4.4e-54 215.3 220 54.1
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.7e-53 212.2 235 51.5
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 6.3e-53 211.5 245 46.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.1e-52 210.7 232 49.1
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.8e-52 209.9 232 49.6
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 4.1e-52 208.8 235 47.2
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 7.0e-52 208.0 205 53.7
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.2e-51 207.2 242 48.3
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 5.9e-51 204.9 239 46.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 7.7e-51 204.5 235 46.8
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.8e-50 202.2 231 46.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 8.5e-50 201.1 237 48.5
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.5e-50 201.1 241 50.2
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-49 200.3 210 51.4
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.2e-49 198.7 203 54.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 9.4e-49 197.6 246 46.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.6e-48 196.8 237 47.7
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-48 196.8 216 50.9
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.6e-48 196.8 225 50.7
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.6e-48 196.8 243 44.0
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.0e-48 194.5 203 52.7
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.4e-47 193.7 236 47.0
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.3e-46 189.1 144 65.3
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.4e-46 188.7 164 60.4
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.4e-46 188.7 99 88.9
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 9.7e-46 187.6 229 45.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.1e-44 182.2 146 61.0
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.6e-43 180.3 233 42.9
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.7e-43 179.5 238 45.0
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 7.7e-43 177.9 255 42.0
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.2e-42 176.4 241 41.9
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.1e-41 174.1 130 62.3
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 6.8e-39 164.9 221 45.2
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 8.8e-39 164.5 128 65.6
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 4.1e-36 155.6 185 49.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.2e-35 154.1 163 50.3
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-35 153.7 227 43.2
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.5e-35 152.5 242 39.7
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.5e-33 147.1 265 34.0
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.9e-33 146.7 116 63.8
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.4e-31 140.6 163 47.9
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 8.9e-31 137.9 138 54.3
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.4e-28 130.6 158 50.6
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.2e-27 127.5 141 48.9
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.0e-27 126.7 133 45.1
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 7.3e-25 118.2 206 39.3
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.0e-18 97.8 136 37.5
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.7e-18 97.1 71 63.4
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.5e-17 93.2 198 33.8
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 4.3e-17 92.4 156 38.5
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 5.6e-17 92.0 79 53.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.2e-13 80.1 65 64.6
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 3.7e-13 79.3 148 31.1
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.9e-12 77.0 92 46.7
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 3.2e-12 76.3 65 61.5
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.4e-12 75.5 77 51.9
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.7e-11 73.2 128 39.1
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.7e-11 73.2 70 57.1
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.3e-10 70.9 61 57.4
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 5.0e-10 68.9 135 31.9
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 4.7e-08 62.4 129 28.7
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 5.2e-07 58.9 97 33.0


User provided reference genes

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