Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 9.9e-86 320.1 162 100.0
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.4e-78 295.0 161 92.5
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 4.0e-71 271.6 161 83.9
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.4e-70 268.5 161 83.2
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 4.5e-70 268.1 161 83.2
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 4.5e-70 268.1 161 82.6
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 4.5e-70 268.1 161 82.6
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 7.6e-70 267.3 161 83.2
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.3e-69 266.5 161 82.6
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 2.2e-69 265.8 161 82.0
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 2.2e-69 265.8 161 82.0
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.9e-69 265.4 161 82.6
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 2.9e-69 265.4 161 80.7
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 2.9e-69 265.4 161 82.6
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 2.9e-69 265.4 161 82.0
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 3.8e-69 265.0 161 81.4
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 4.9e-69 264.6 161 81.4
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 4.9e-69 264.6 161 82.0
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 6.4e-69 264.2 161 83.2
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 8.4e-69 263.8 161 82.0
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 8.4e-69 263.8 161 82.0
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 8.4e-69 263.8 161 82.6
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.4e-68 263.1 161 82.0
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.4e-68 263.1 162 79.0
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.4e-68 263.1 161 81.4
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.9e-68 262.7 161 81.4
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.4e-68 262.3 161 82.0
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 2.4e-68 262.3 161 80.1
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 3.2e-68 261.9 161 80.1
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 4.2e-68 261.5 161 80.7
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 4.2e-68 261.5 161 80.7
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 5.5e-68 261.2 161 79.5
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 5.5e-68 261.2 161 80.7
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 5.5e-68 261.2 161 80.1
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 5.5e-68 261.2 161 81.4
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 7.1e-68 260.8 161 79.5
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 7.1e-68 260.8 161 79.5
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 7.1e-68 260.8 161 80.1
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 7.1e-68 260.8 161 80.1
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 7.1e-68 260.8 161 80.1
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 7.1e-68 260.8 161 81.4
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 9.3e-68 260.4 161 80.1
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 9.3e-68 260.4 161 80.7
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 9.3e-68 260.4 161 79.5
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.2e-67 260.0 169 79.3
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.6e-67 259.6 161 80.7
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.6e-67 259.6 161 80.7
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 1.6e-67 259.6 161 78.3
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.6e-67 259.6 160 81.2
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 2.1e-67 259.2 161 78.9
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.7e-67 258.8 161 79.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 2.7e-67 258.8 161 79.5
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.7e-67 258.8 161 79.5
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 2.7e-67 258.8 161 79.5
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.7e-67 258.8 161 79.5
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 3.5e-67 258.5 161 80.7
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.5e-67 258.5 162 80.9
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 4.6e-67 258.1 161 78.9
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 4.6e-67 258.1 169 78.7
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 4.6e-67 258.1 160 81.2
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 4.6e-67 258.1 161 81.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 6.0e-67 257.7 161 78.9
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 6.0e-67 257.7 161 78.9
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 6.0e-67 257.7 161 78.3
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 6.0e-67 257.7 160 81.9
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 6.0e-67 257.7 161 79.5
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.9e-67 257.3 161 80.1
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 7.9e-67 257.3 160 80.6
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 7.9e-67 257.3 160 80.6
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 7.9e-67 257.3 160 80.6
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 7.9e-67 257.3 161 80.1
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 7.9e-67 257.3 161 79.5
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.0e-66 256.9 161 79.5
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.0e-66 256.9 161 79.5
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.3e-66 256.5 161 78.3
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 1.3e-66 256.5 160 81.2
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.8e-66 256.1 162 79.6
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.8e-66 256.1 160 81.9
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.8e-66 256.1 162 80.2
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.3e-66 255.8 161 79.5
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 3.0e-66 255.4 160 81.2
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.0e-66 255.4 160 81.2
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 6.7e-66 254.2 161 79.5
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 6.7e-66 254.2 160 80.0
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 1.1e-65 253.4 161 79.5
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.1e-65 253.4 161 79.5
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.1e-65 253.4 161 78.3
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 1.1e-65 253.4 160 80.0
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.5e-65 253.1 161 78.9
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.5e-65 253.1 161 78.3
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.9e-65 252.7 160 80.0
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 1.9e-65 252.7 160 81.2
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 4.3e-65 251.5 161 77.6
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 4.3e-65 251.5 161 77.6
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 7.4e-65 250.8 161 78.3
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.3e-64 250.0 160 79.4
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.3e-64 250.0 160 79.4
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.6e-64 249.6 161 77.6
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.6e-64 249.6 161 76.4
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 3.7e-64 248.4 172 74.4
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 3.7e-64 248.4 161 75.8
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 3.7e-64 248.4 161 75.8
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 3.7e-64 248.4 160 79.4
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 4.8e-64 248.1 161 77.6
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 8.1e-64 247.3 161 77.6
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.8e-63 246.1 161 77.0
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 4.0e-63 245.0 161 73.3
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 4.0e-63 245.0 161 75.8
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 9.0e-63 243.8 189 69.3
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.2e-62 243.4 164 76.8
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.2e-62 243.4 164 76.8
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 2.0e-62 242.7 161 75.2
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 2.6e-62 242.3 161 78.3
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 3.4e-62 241.9 162 73.5
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.0e-61 240.4 164 76.2
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.8e-58 229.6 157 76.4
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 8.2e-56 220.7 161 70.2
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 3.8e-53 211.8 160 71.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.1e-52 210.3 127 80.3
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.3e-50 203.4 162 59.9
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.7e-50 201.1 128 75.8
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 3.1e-47 192.2 145 68.3
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 9.0e-47 190.7 161 58.4
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.1e-44 183.7 161 57.1
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.3e-42 176.0 111 76.6
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 2.2e-40 169.5 174 55.2
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.6e-38 162.5 106 76.4
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.7e-33 144.1 105 69.5
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-31 140.2 132 59.1
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 3.1e-31 139.0 132 58.3
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.7e-29 133.3 80 81.2
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.9e-29 132.5 103 67.0
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.8e-29 132.1 83 78.3
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.5e-29 131.0 124 55.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 7.2e-28 127.9 116 57.8
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 3.6e-27 125.6 81 75.3
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.8e-26 123.2 124 54.0
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 3.0e-26 122.5 89 66.3
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.0e-21 107.5 110 54.5
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 4.1e-15 85.5 73 60.3
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 2.6e-09 66.2 69 53.6
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 9.8e-09 64.3 40 77.5
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 7.0e-07 58.2 44 61.4


User provided reference genes

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