Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 0.0e+00 1664.8 868 100.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.4e-250 870.2 885 49.3
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.0e-245 852.4 881 48.1
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 6.6e-245 851.3 880 48.6
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 2.1e-238 829.7 868 47.2
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 3.1e-234 815.8 869 47.0
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 4.4e-233 812.0 874 46.9
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 9.9e-233 810.8 870 46.9
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 1.7e-232 810.1 871 46.5
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 6.4e-232 808.1 874 46.0
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 6.4e-232 808.1 874 46.0
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 1.9e-231 806.6 871 45.6
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 1.9e-231 806.6 872 45.8
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 3.2e-231 805.8 869 45.6
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 5.4e-231 805.1 868 46.0
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 7.1e-231 804.7 877 46.4
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.2e-230 803.9 870 46.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 1.6e-230 803.5 871 45.8
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 3.5e-230 802.4 876 46.0
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 1.0e-229 800.8 875 46.1
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 2.3e-229 799.7 870 45.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 3.9e-229 798.9 873 45.7
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 9.6e-228 794.3 868 46.5
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 1.3e-227 793.9 872 46.0
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 1.3e-227 793.9 873 45.4
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 3.6e-227 792.3 865 46.4
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 8.1e-227 791.2 869 44.8
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 1.1e-226 790.8 869 45.9
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 1.8e-226 790.0 869 45.9
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 2.4e-226 789.6 869 45.8
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 4.0e-226 788.9 869 46.1
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 5.3e-226 788.5 867 44.9
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 6.9e-226 788.1 872 46.3
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 9.0e-226 787.7 871 45.8
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 2.6e-225 786.2 871 44.5
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 3.4e-225 785.8 869 45.2
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 4.5e-225 785.4 860 46.5
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 5.8e-225 785.0 885 44.6
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 1.7e-224 783.5 873 46.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 2.2e-224 783.1 871 45.5
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 2.9e-224 782.7 871 45.0
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 4.9e-224 781.9 880 45.8
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 6.4e-224 781.6 874 45.1
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 8.4e-224 781.2 869 46.0
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.1e-223 780.8 873 45.1
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 1.4e-223 780.4 862 45.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 3.2e-223 779.2 859 44.9
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 4.2e-223 778.9 871 45.1
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 5.4e-223 778.5 874 45.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 2.7e-222 776.2 869 45.5
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.7e-222 776.2 871 45.1
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 3.5e-222 775.8 874 45.0
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 3.5e-222 775.8 874 45.0
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 4.6e-222 775.4 868 45.7
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 6.0e-222 775.0 869 45.1
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 6.0e-222 775.0 869 45.1
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 7.9e-222 774.6 868 44.8
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 1.3e-221 773.9 868 46.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 2.3e-221 773.1 871 44.1
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 3.0e-221 772.7 862 45.7
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 3.0e-221 772.7 861 46.0
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 5.1e-221 771.9 851 45.0
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 1.1e-220 770.8 858 45.9
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 1.9e-220 770.0 858 45.8
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 1.9e-220 770.0 872 44.7
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 2.5e-220 769.6 877 44.7
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 3.3e-220 769.2 858 45.8
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 3.3e-220 769.2 901 43.3
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 1.6e-219 766.9 871 45.1
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 1.6e-219 766.9 858 45.8
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 3.7e-219 765.8 871 45.0
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 4.8e-219 765.4 885 44.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 8.1e-219 764.6 867 45.4
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.4e-218 763.8 866 44.5
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 1.4e-218 763.8 848 45.9
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 3.1e-218 762.7 858 45.7
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 4.0e-218 762.3 871 44.7
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 4.0e-218 762.3 915 43.2
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 5.3e-218 761.9 838 45.2
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 9.0e-218 761.1 858 45.1
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 2.0e-217 760.0 871 45.8
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 5.8e-217 758.4 858 45.0
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 6.4e-216 755.0 894 43.3
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 7.1e-215 751.5 935 41.8
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 1.1e-212 744.2 872 42.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 2.5e-212 743.0 905 43.0
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 4.3e-212 742.3 768 47.4
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 6.2e-211 738.4 855 45.6
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 1.4e-210 737.3 873 44.0
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 2.0e-209 733.4 858 44.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 2.0e-209 733.4 953 41.2
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 4.5e-209 732.3 883 42.8
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 1.9e-207 726.9 1013 39.0
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 1.6e-206 723.8 873 43.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 7.2e-191 671.8 961 40.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 9.4e-191 671.4 892 40.6
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.4e-186 657.5 899 40.5
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 2.2e-176 623.6 700 44.3
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 2.2e-171 607.1 803 41.5
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 8.2e-171 605.1 944 38.0
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 4.8e-163 579.3 758 41.3
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.8e-157 560.8 655 42.6
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.5e-143 513.8 635 42.2
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 4.1e-130 469.9 566 44.0
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.8e-125 454.5 489 46.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.4e-117 428.3 382 53.1
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 9.9e-116 422.2 888 30.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 1.9e-114 417.9 590 38.1
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 6.6e-112 409.5 509 41.5
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 6.2e-110 402.9 502 40.6
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 3.4e-100 370.5 491 38.7
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.9e-96 357.1 384 45.6
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.5e-95 355.1 843 29.4
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.5e-95 354.4 327 50.8
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 1.5e-84 318.5 449 37.4
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.4e-72 278.9 623 31.0
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 5.3e-69 266.9 749 28.4
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 2.7e-65 254.6 666 29.9
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.1e-63 249.2 160 66.9
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 4.1e-61 240.7 235 51.5
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.8e-41 174.9 529 27.0
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 2.3e-40 171.8 386 32.1
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.9e-35 154.8 678 22.1
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-29 136.0 132 52.3
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.2e-25 122.9 216 32.9
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.1e-21 107.8 94 55.3
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.5e-18 98.6 96 45.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 5.2e-16 90.9 154 30.5
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 2.0e-15 89.0 119 38.7
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 1.1e-08 66.6 40 62.5
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.9e-08 63.5 54 48.1


User provided reference genes

Program Settings