Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.1e-218 763.1 400 100.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 7.9e-84 315.1 246 72.8
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 7.9e-84 315.1 246 72.4
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.7e-83 313.9 246 72.4
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.6e-81 306.2 252 71.4
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 4.8e-81 305.8 243 71.6
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.5e-79 300.8 241 73.0
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 3.4e-79 299.7 243 70.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.4e-77 294.3 253 70.8
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 7.1e-77 292.0 253 70.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 9.3e-77 291.6 209 76.6
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.1e-76 290.4 248 67.3
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 2.7e-76 290.0 253 70.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 3.5e-76 289.7 246 69.1
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 7.9e-76 288.5 259 67.6
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.3e-75 287.0 244 70.1
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.9e-75 286.2 202 75.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 6.7e-75 285.4 243 68.7
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.5e-74 284.3 246 69.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 7.4e-74 282.0 167 83.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 7.4e-74 282.0 252 66.7
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.3e-73 281.2 213 74.6
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.6e-73 280.8 252 66.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.7e-73 279.6 265 66.0
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 6.2e-73 278.9 227 70.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 6.2e-73 278.9 227 70.5
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 6.2e-73 278.9 254 66.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 8.1e-73 278.5 163 84.0
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.1e-72 278.1 271 66.1
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.1e-72 278.1 187 80.2
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.8e-72 277.3 252 67.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.8e-72 277.3 239 68.6
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 5.3e-72 275.8 163 84.7
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.0e-71 273.9 165 82.4
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.4e-71 273.1 237 67.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.4e-71 273.1 228 69.3
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 7.6e-71 271.9 174 80.5
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 7.6e-71 271.9 177 80.2
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.3e-70 271.2 212 71.7
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-70 271.2 189 76.7
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.7e-70 270.8 156 86.5
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-70 270.4 194 75.8
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.2e-70 270.4 171 80.7
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.9e-70 270.0 228 68.9
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.8e-70 269.6 250 66.8
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 3.8e-70 269.6 244 65.6
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 4.9e-70 269.2 256 63.7
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.5e-70 268.9 149 87.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 6.5e-70 268.9 153 86.9
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-69 267.7 190 74.7
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.4e-69 267.7 222 68.9
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.9e-69 267.3 248 64.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.2e-69 266.5 230 67.4
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-69 266.2 205 73.2
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 4.2e-69 266.2 234 66.2
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 5.5e-69 265.8 236 65.7
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.5e-69 265.8 251 64.5
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.5e-69 265.8 176 79.0
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 9.3e-69 265.0 234 66.7
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.2e-68 264.6 167 79.0
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.2e-68 264.6 245 64.5
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.5e-68 263.1 165 80.0
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.6e-68 262.7 243 64.6
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 4.6e-68 262.7 226 67.3
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 6.0e-68 262.3 252 61.5
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.0e-68 262.3 263 65.0
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 7.9e-68 261.9 183 76.0
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.9e-68 261.9 237 67.5
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-67 261.5 263 61.2
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.0e-67 261.5 207 69.6
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.0e-67 261.5 263 61.2
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.0e-67 261.5 207 69.6
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.0e-67 261.5 251 63.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.0e-67 261.5 251 63.7
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-67 261.2 263 61.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.9e-67 259.6 172 77.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.1e-67 259.2 166 80.7
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 8.7e-67 258.5 252 61.1
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.1e-66 258.1 180 76.1
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.1e-66 258.1 180 76.1
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.5e-66 257.7 265 60.4
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.5e-66 256.9 228 65.8
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 3.3e-66 256.5 151 83.4
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.7e-66 255.8 213 68.1
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.7e-66 255.8 252 62.7
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 5.7e-66 255.8 263 63.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 7.4e-66 255.4 231 66.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 9.6e-66 255.0 253 62.8
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 9.6e-66 255.0 241 65.6
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.3e-65 254.6 197 70.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-65 254.6 153 81.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-65 254.6 153 81.7
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.6e-65 254.2 243 65.4
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-65 253.8 250 62.4
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.1e-65 253.8 239 65.3
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.8e-65 253.4 231 65.4
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.8e-65 253.4 248 62.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.7e-65 253.1 242 63.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 6.3e-65 252.3 163 77.3
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 6.3e-65 252.3 245 62.0
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.1e-64 251.5 241 64.7
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.1e-64 251.5 245 64.9
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.8e-64 250.8 238 64.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 2.4e-64 250.4 200 70.5
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.1e-64 249.6 249 62.7
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 4.1e-64 249.6 219 67.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 5.3e-64 249.2 182 75.3
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 5.3e-64 249.2 149 83.2
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 6.9e-64 248.8 243 60.9
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 7.6e-63 245.4 257 61.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.0e-62 245.0 252 60.7
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.7e-62 244.2 153 79.7
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.8e-62 243.0 240 62.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.8e-62 243.0 192 69.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.9e-61 240.7 215 64.7
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.5e-61 240.4 166 75.9
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 5.5e-61 239.2 247 58.7
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.7e-60 236.9 235 61.3
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 4.6e-60 236.1 244 61.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 7.9e-60 235.3 195 66.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.0e-59 235.0 239 61.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.8e-59 234.2 238 60.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 6.7e-59 232.3 229 61.1
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 6.7e-59 232.3 270 58.5
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 8.7e-59 231.9 150 76.7
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.9e-58 230.7 236 59.7
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.9e-58 230.7 236 59.7
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.1e-56 224.9 246 58.1
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.1e-56 224.9 246 58.1
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-56 224.6 270 55.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.4e-56 223.8 245 57.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 5.9e-55 219.2 243 58.8
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.3e-54 218.0 253 60.1
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.2e-54 217.2 246 59.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.1e-52 210.7 136 76.5
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.6e-52 209.5 234 56.8
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-51 208.0 122 83.6
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.1e-50 204.9 161 66.5
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.6e-50 203.8 235 54.9
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.7e-49 199.9 232 57.3
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.1e-48 196.4 230 53.9
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-47 194.9 149 69.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 6.5e-46 189.1 188 56.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.1e-45 188.3 160 60.0
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 3.6e-44 183.3 208 59.6
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.3e-43 180.6 245 52.2
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.1e-42 178.3 169 58.0
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.1e-42 178.3 148 64.9
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.7e-41 174.5 124 72.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-35 155.2 103 77.7
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.8e-35 154.5 193 56.5
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 8.8e-35 152.1 94 79.8
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.1e-32 143.3 198 49.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.1e-32 143.3 277 41.9
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.1e-32 143.3 277 41.9
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.9e-29 134.4 277 40.8
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.2e-26 125.2 138 50.0
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.5e-22 109.4 194 43.8
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 2.2e-17 94.4 53 83.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.6e-13 79.7 50 74.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.2e-12 78.6 40 95.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.1e-12 77.8 151 45.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 6.1e-12 76.3 79 51.9


User provided reference genes

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