Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17296 Sapria himalayana HOM05D000329 ORTHO05D002132 2.2e-123 445.7 225 100.0
Potri.012G092400 Populus trichocarpa HOM05D000329 ORTHO05D002132 1.1e-29 134.4 88 71.6
Potri.015G089000 Populus trichocarpa HOM05D000329 ORTHO05D002132 9.0e-29 131.3 88 69.3
TWI23G0872 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 2.0e-28 130.2 88 68.2
TWI09G0874 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 2.6e-28 129.8 88 68.2
TWI39G0078 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 5.9e-28 128.6 88 67.0
Prupe.5G159200 Prunus persica HOM05D000329 ORTHO05D002132 1.0e-27 127.9 120 56.7
CsaV3_1G009200 Cucumis sativus L. HOM05D000329 ORTHO05D002132 1.7e-27 127.1 121 52.1
Lalb_Chr12g0202071 Lupinus albus HOM05D000329 ORTHO05D002132 2.2e-27 126.7 120 53.3
Cpa.g.sc4.49 Carica papaya HOM05D000329 ORTHO05D002132 2.9e-27 126.3 112 58.0
Manes.14G055900 Manihot esculenta HOM05D000329 ORTHO05D002132 2.9e-27 126.3 120 55.0
Atru.chr9.996 Acer truncatum HOM05D000329 ORTHO05D002132 3.8e-27 125.9 120 54.2
Lj4g0026894 Lotus japonicus HOM05D000329 ORTHO05D002132 3.8e-27 125.9 120 53.3
CANSAT80G2211 Cannabis sativa HOM05D000329 ORTHO05D002132 5.0e-27 125.6 88 67.0
Lalb_Chr13g0297471 Lupinus albus HOM05D000329 ORTHO05D002132 5.0e-27 125.6 120 53.3
Glyma.04G191900 Glycine max HOM05D000329 ORTHO05D002132 6.5e-27 125.2 120 51.7
Manes.06G114100 Manihot esculenta HOM05D000329 ORTHO05D002132 6.5e-27 125.2 88 65.9
Glyma.04G192000 Glycine max HOM05D000329 ORTHO05D002132 1.1e-26 124.4 120 50.8
ClCG03G003410 Citrullus lanatus HOM05D000329 ORTHO05D002132 1.4e-26 124.0 121 51.2
Lj9C473T12 Lonicera japonica HOM05D000329 ORTHO05D002132 1.4e-26 124.0 88 67.0
Eucgr.K02763 Eucalyptus grandis HOM05D000329 ORTHO05D002132 1.9e-26 123.6 88 67.0
PGR044G2583 Punica granatum HOM05D000329 ORTHO05D002132 1.9e-26 123.6 88 64.8
Sed0027086 Sechium edule HOM05D000329 ORTHO05D002132 1.9e-26 123.6 120 50.8
COL.COLO4_07696 Corchorus olitorius HOM05D000329 ORTHO05D002132 2.5e-26 123.2 88 65.9
Dinv38483 Davidia involucrata HOM05D000329 ORTHO05D002132 2.5e-26 123.2 88 63.6
Glyma.06G173800 Glycine max HOM05D000329 ORTHO05D002132 2.5e-26 123.2 120 50.0
CSS0040707 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D002132 3.2e-26 122.9 88 64.8
Cfa018901 Carpinus fangiana HOM05D000329 ORTHO05D002132 3.2e-26 122.9 120 55.0
GSVIVG01007564001 Vitis vinifera HOM05D000329 ORTHO05D002132 3.2e-26 122.9 88 62.5
TAR371G0021 Trochodendron aralioides HOM05D000329 ORTHO05D002132 4.2e-26 122.5 94 59.6
Ca_16097_v3 Cicer arietinum L. HOM05D000329 ORTHO05D002132 7.2e-26 121.7 124 50.0
Ca_30074_v3 Cicer arietinum L. HOM05D000329 ORTHO05D002132 7.2e-26 121.7 124 50.0
Dinv11116 Davidia involucrata HOM05D000329 ORTHO05D002132 7.2e-26 121.7 111 55.9
Haze_07287 Corylus avellana HOM05D000329 ORTHO05D002132 9.4e-26 121.3 120 51.7
Thecc.03G121300 Theobroma cacao HOM05D000329 ORTHO05D002132 9.4e-26 121.3 88 64.8
VMungo1309G0990 Vigna mungo HOM05D000329 ORTHO05D002132 9.4e-26 121.3 121 51.2
Ca_05569_v3 Cicer arietinum L. HOM05D000329 ORTHO05D002132 1.2e-25 120.9 124 50.8
TPR.G38691 Trifolium pratense HOM05D000329 ORTHO05D002132 1.2e-25 120.9 121 51.2
VMungo1215G0735 Vigna mungo HOM05D000329 ORTHO05D002132 1.2e-25 120.9 120 51.7
Actinidia19376 Actinidia chinensis HOM05D000329 ORTHO05D002132 1.6e-25 120.6 107 55.1
Lj1g0003307 Lotus japonicus HOM05D000329 ORTHO05D002132 1.6e-25 120.6 120 51.7
arahy.Tifrunner.gnm1.ann1.GH32MD Arachis hypogaea HOM05D000329 ORTHO05D002132 2.1e-25 120.2 120 50.8
Phvul.009G169700 Phaseolus vulgaris HOM05D000329 ORTHO05D002132 2.1e-25 120.2 88 63.6
QL10p005509 Quercus lobata HOM05D000329 ORTHO05D002132 2.7e-25 119.8 120 50.8
Glyma.06G174000 Glycine max HOM05D000329 ORTHO05D002132 3.6e-25 119.4 120 50.0
Actinidia16198 Actinidia chinensis HOM05D000329 ORTHO05D002132 4.6e-25 119.0 107 54.2
Gohir.A09G244800 Gossypium hirsutum HOM05D000329 ORTHO05D002132 4.6e-25 119.0 88 63.6
Sopen03g030710 Solanum pennellii HOM05D000329 ORTHO05D002132 4.6e-25 119.0 88 61.4
Gohir.A07G054000 Gossypium hirsutum HOM05D000329 ORTHO05D002132 6.1e-25 118.6 88 63.6
Gohir.D07G058400 Gossypium hirsutum HOM05D000329 ORTHO05D002132 6.1e-25 118.6 88 63.6
Gorai.001G061900 Gossypium raimondii HOM05D000329 ORTHO05D002132 6.1e-25 118.6 88 63.6
TAR629G0012 Trochodendron aralioides HOM05D000329 ORTHO05D002132 6.1e-25 118.6 88 62.5
arahy.Tifrunner.gnm1.ann1.28MHAL Arachis hypogaea HOM05D000329 ORTHO05D002132 7.9e-25 118.2 121 50.4
Gohir.D09G245700 Gossypium hirsutum HOM05D000329 ORTHO05D002132 7.9e-25 118.2 88 63.6
RcHm_v2.0_Chr7g0191461 Rosa chinensis HOM05D000329 ORTHO05D002132 7.9e-25 118.2 88 63.6
AL5G27840 Arabidopsis lyrata HOM05D000329 ORTHO05D002132 1.4e-24 117.5 107 57.9
CiPaw.11G013200 Carya illinoinensis HOM05D000329 ORTHO05D002132 1.8e-24 117.1 88 63.6
Thhalv10010068m.g Eutrema salsugineum HOM05D000329 ORTHO05D002132 1.8e-24 117.1 107 56.1
Gorai.006G270100 Gossypium raimondii HOM05D000329 ORTHO05D002132 1.8e-24 117.1 88 63.6
MD14G1165600 Malus domestica HOM05D000329 ORTHO05D002132 1.8e-24 117.1 88 63.6
PGSC0003DMG400015167 Solanum tuberosum HOM05D000329 ORTHO05D002132 1.8e-24 117.1 88 60.2
FvH4_5g07090 Fragaria vesca HOM05D000329 ORTHO05D002132 2.3e-24 116.7 88 62.5
FAN08G1572 Fragaria x ananassa HOM05D000329 ORTHO05D002132 2.3e-24 116.7 88 62.5
FAN13G2326 Fragaria x ananassa HOM05D000329 ORTHO05D002132 2.3e-24 116.7 88 62.5
FAN18G2482 Fragaria x ananassa HOM05D000329 ORTHO05D002132 2.3e-24 116.7 88 62.5
Psat5g141200 Pisum sativum HOM05D000329 ORTHO05D002132 2.3e-24 116.7 116 50.9
Sed0007345 Sechium edule HOM05D000329 ORTHO05D002132 2.3e-24 116.7 121 47.9
Solyc03g111590.4 Solanum lycopersicum HOM05D000329 ORTHO05D002132 2.3e-24 116.7 88 60.2
AL5G27830 Arabidopsis lyrata HOM05D000329 ORTHO05D002132 3.0e-24 116.3 107 57.0
CAN.G472.44 Capsicum annuum HOM05D000329 ORTHO05D002132 3.0e-24 116.3 88 60.2
Duzib068G0269 Durio zibethinus HOM05D000329 ORTHO05D002132 3.0e-24 116.3 88 63.6
MD06G1159300 Malus domestica HOM05D000329 ORTHO05D002132 3.0e-24 116.3 88 62.5
Nitab4.5_0001360g0100 Nicotiana tabacum HOM05D000329 ORTHO05D002132 3.0e-24 116.3 145 44.8
Oeu045488.1 Olea europaea HOM05D000329 ORTHO05D002132 3.0e-24 116.3 109 52.3
Aa31LG4G17010 Aethionema arabicum HOM05D000329 ORTHO05D002132 3.9e-24 115.9 105 56.2
Medtr3g075210 Medicago truncatula HOM05D000329 ORTHO05D002132 3.9e-24 115.9 121 51.2
FAN04G3077 Fragaria x ananassa HOM05D000329 ORTHO05D002132 5.1e-24 115.5 88 61.4
Nitab4.5_0002531g0100 Nicotiana tabacum HOM05D000329 ORTHO05D002132 5.1e-24 115.5 140 45.0
Phvul.003G207700 Phaseolus vulgaris HOM05D000329 ORTHO05D002132 5.1e-24 115.5 120 50.0
Sc04g0001070 Simmondsia chinensis HOM05D000329 ORTHO05D002132 5.1e-24 115.5 88 62.5
Thhalv10010066m.g Eutrema salsugineum HOM05D000329 ORTHO05D002132 6.7e-24 115.2 107 56.1
Peaxi162Scf00089g00844 Petunia axillaris HOM05D000329 ORTHO05D002132 6.7e-24 115.2 88 59.1
Hund18533 Selenicereus undatus HOM05D000329 ORTHO05D002132 6.7e-24 115.2 88 59.1
THA.LOC104821500 Tarenaya hassleriana HOM05D000329 ORTHO05D002132 6.7e-24 115.2 88 63.6
Hma1.2p1_0014F.1_g010040 Hydrangea macrophylla HOM05D000329 ORTHO05D002132 8.8e-24 114.8 117 50.4
CARHR157180 Cardamine hirsuta HOM05D000329 ORTHO05D002132 1.1e-23 114.4 107 54.2
CARHR157190 Cardamine hirsuta HOM05D000329 ORTHO05D002132 1.1e-23 114.4 88 62.5
Psat4g065080 Pisum sativum HOM05D000329 ORTHO05D002132 1.1e-23 114.4 88 61.4
Aqoxy5G03611 Aquilegia oxysepala HOM05D000329 ORTHO05D002132 1.5e-23 114.0 88 56.8
AT3G48430 Arabidopsis thaliana HOM05D000329 ORTHO05D002132 2.0e-23 113.6 88 61.4
Duzib084G0575 Durio zibethinus HOM05D000329 ORTHO05D002132 2.5e-23 113.2 111 52.3
Ciclev10018473m.g Citrus clementina HOM05D000329 ORTHO05D002132 3.3e-23 112.8 120 49.2
BcaB02g10653 Brassica carinata HOM05D000329 ORTHO05D002132 5.7e-23 112.1 88 61.4
AUR62001265 Chenopodium quinoa HOM05D000329 ORTHO05D002132 5.7e-23 112.1 88 60.2
AUR62025745 Chenopodium quinoa HOM05D000329 ORTHO05D002132 5.7e-23 112.1 88 60.2
Sp5g13600 Schrenkiella parvula HOM05D000329 ORTHO05D002132 7.4e-23 111.7 107 53.3
Actinidia36780 Actinidia chinensis HOM05D000329 ORTHO05D002132 1.3e-22 110.9 117 48.7
EL10Ac7g18056 Beta vulgaris HOM05D000329 ORTHO05D002132 1.3e-22 110.9 88 59.1
BraA06t25008Z Brassica rapa HOM05D000329 ORTHO05D002132 1.3e-22 110.9 88 60.2
Hund05623 Selenicereus undatus HOM05D000329 ORTHO05D002132 1.3e-22 110.9 88 58.0
Ah.15g095410 Amaranthus hybridus HOM05D000329 ORTHO05D002132 1.7e-22 110.5 88 58.0
Nn3g16603 Nelumbo nucifera HOM05D000329 ORTHO05D002132 1.7e-22 110.5 112 48.2
BcaB01g00810 Brassica carinata HOM05D000329 ORTHO05D002132 2.2e-22 110.2 88 59.1
vmacro16699 Vaccinium macrocarpon HOM05D000329 ORTHO05D002132 2.2e-22 110.2 88 56.8
Oeu023470.1 Olea europaea HOM05D000329 ORTHO05D002132 2.8e-22 109.8 109 49.5
Cc04_g10620 Coffea canephora HOM05D000329 ORTHO05D002132 3.7e-22 109.4 88 55.7
A06p19240 Brassica napus HOM05D000329 ORTHO05D002132 4.8e-22 109.0 88 59.1
HPP92_013548 Vanilla planifolia HOM05D000329 ORTHO05D002132 1.1e-21 107.8 88 54.5
Nn4g22484 Nelumbo nucifera HOM05D000329 ORTHO05D002132 1.4e-21 107.5 88 54.5
Rhsim12G0171300 Rhododendron simsii HOM05D000329 ORTHO05D002132 1.4e-21 107.5 109 48.6
SalBow7G4806 Salvia bowleyana HOM05D000329 ORTHO05D002132 1.4e-21 107.5 88 55.7
Sp5g13610 Schrenkiella parvula HOM05D000329 ORTHO05D002132 1.8e-21 107.1 114 49.1
C08p23440 Brassica napus HOM05D000329 ORTHO05D002132 5.3e-21 105.5 88 60.2
BolC8t49972H Brassica oleracea HOM05D000329 ORTHO05D002132 5.3e-21 105.5 88 60.2
Os12g0279100 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D002132 2.6e-20 103.2 92 50.0
HPP92_020224 Vanilla planifolia HOM05D000329 ORTHO05D002132 3.4e-20 102.8 97 46.4
CDE07G1171 Ceratophyllum demersum HOM05D000329 ORTHO05D002132 4.5e-20 102.4 116 44.0
Zm00001eb409800 Zea mays HOM05D000329 ORTHO05D002132 4.5e-20 102.4 110 43.6
Actinidia08850 Actinidia chinensis HOM05D000329 ORTHO05D002132 5.9e-20 102.1 113 46.0
PSO782G4118 Papaver somniferum HOM05D000329 ORTHO05D002132 5.9e-20 102.1 88 53.4
MSTRG.22937 Avicennia marina HOM05D000329 ORTHO05D002132 1.3e-19 100.9 88 53.4
HanXRQChr04g0100761 Helianthus annuus HOM05D000329 ORTHO05D002132 2.2e-19 100.1 89 52.8
Os01g0907400 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D002132 6.5e-19 98.6 88 48.9
Lsat_1_v5_gn_1_28820 Lactuca sativa HOM05D000329 ORTHO05D002132 8.5e-19 98.2 89 53.9
Aqoxy3G01318 Aquilegia oxysepala HOM05D000329 ORTHO05D002132 1.4e-18 97.4 83 51.8
ECA247G2850 Erigeron canadensis HOM05D000329 ORTHO05D002132 1.4e-18 97.4 89 52.8
Actinidia16197 Actinidia chinensis HOM05D000568 ORTHO05D003200 2.5e-18 96.7 73 61.6
MSTRG.11301 Avicennia marina HOM05D000329 ORTHO05D002132 2.5e-18 96.7 88 51.1
SGA_v2.0_scaffold19G08825 Striga asiatica HOM05D000329 ORTHO05D002132 9.4e-18 94.7 110 47.3
Migut.I00266 Erythranthe guttata HOM05D000329 ORTHO05D002132 1.2e-17 94.4 88 50.0
Zm00001eb365340 Zea mays HOM05D000329 ORTHO05D002132 4.7e-17 92.4 115 39.1
ATR0824G004 Amborella trichopoda HOM05D000329 ORTHO05D002132 1.0e-16 91.3 119 39.5
Lsat_1_v5_gn_1_28420 Lactuca sativa HOM05D000329 ORTHO05D002132 2.0e-15 87.0 86 46.5
unitig_26.g9676 Utricularia gibba HOM05D000329 ORTHO05D002132 2.0e-15 87.0 105 43.8
HanXRQChr04g0108501 Helianthus annuus HOM05D000329 ORTHO05D002132 3.1e-13 79.7 93 44.1
SEGI_26590 Sequoiadendron giganteum HOM05D000329 ORTHO05D002132 3.1e-13 79.7 93 39.8
Carub.0005s1460 Capsella rubella HOM05D000329 ORTHO05D002132 7.0e-13 78.6 60 60.0
CDE04G2798 Ceratophyllum demersum HOM05D000329 ORTHO05D002132 2.6e-12 76.6 65 49.2
SEGI_01288 Sequoiadendron giganteum HOM05D000329 ORTHO05D015891 5.0e-11 72.4 85 43.5
HanXRQChr02g0035111 Helianthus annuus HOM05D000329 ORTHO05D029210 1.3e-06 57.8 75 38.7


User provided reference genes

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