Gene: AT3G48430

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G48430
  • Transcript Identifier AT3G48430.1
  • Gene Type Coding gene
  • Location Chr3 : 17935609-17940456 : positive

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G48430.1
  • symbol REF6
  • Alias JMJ12,Jumonji domain-containing protein 12
  • uniprot Q9STM3

Descriptions

  • Description relative of early flowering 6
  • Computational description relative of early flowering 6 (REF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C2H2-like (InterPro:IPR015880), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, C2H2-type (InterPro:IPR007087), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (TAIR:AT5G04240.1); Has 105567 Blast hits to 35250 proteins in 1010 species: Archae - 0; Bacteria - 23; Metazoa - 99094; Fungi - 2247; Plants - 673; Viruses - 7; Other Eukaryotes - 3523 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0040010
ISO
PLAZA Integrative Orthologypositive regulation of growth rate Os01g0907400
GO:0045815
ISO
PLAZA Integrative Orthologypositive regulation of gene expression, epigenetic Os01g0907400
GO:0006325
IEA
GOA Databasechromatin organization
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0006338
IBA
Gene Ontologychromatin remodeling1
GO:0009873
IMP
Gene Ontologyethylene-activated signaling pathway2
GO:0010104
IGI
Gene Ontologyregulation of ethylene-activated signaling pathway3
GO:0048366
IMP
Gene Ontologyleaf development4
GO:0033169
IMP
Gene Ontologyhistone H3-K9 demethylation4
GO:0009826
IMP
Gene Ontologyunidimensional cell growth4
GO:0009741
IMP
Gene Ontologyresponse to brassinosteroid4
GO:0035067
IMP
Gene Ontologynegative regulation of histone acetylation5
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem5
GO:0010182
TAS
Gene Ontologysugar mediated signaling pathway6
GO:0009612
IEP
Gene Ontologyresponse to mechanical stimulus7

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034647
IBA
Gene Ontologyhistone demethylase activity (H3-trimethyl-K4 specific)1
GO:0071558
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K27 specific) Os01g0907400
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051213
IEA
GOA Databasedioxygenase activity
GO:0032452
IBA
Gene Ontologyhistone demethylase activity1
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013087 Zinc finger C2H2-type
IPR003349 JmjN domain
IPR036236 Zinc finger C2H2 superfamily
IPR003347 JmjC domain
Mapman id Description
12.3.3.8.6 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM9)