Gene: Zm00001eb365340

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb365340
  • Transcript Identifier Zm00001eb365340_T001
  • Gene Type Coding gene
  • Location 8 : 169735139-169741556 : positive

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb365340_T001
  • pid Zm00001eb365340_P001
  • uniprot A0A3L6DU58
  • uniprot A0A1D6N411
  • uniprot A0A3L6FPF7
  • uniprot A0A1D6G6Q8
  • uniprot A0A1D6G6Q7
  • uniprot A0A1D6G6Q6
  • uniprot A0A1D6N409
  • entrez 103636385
  • refseq XP_008656966.1
  • refseq XM_008658744.1
  • V4_identifier Zm00001d012119

Descriptions

  • Description Zm00001e028534
  • Description Lysine-specific demethylase REF6
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010182
ISO
PLAZA Integrative Orthologysugar mediated signaling pathway AT3G48430
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT3G48430
GO:0010104
ISO
PLAZA Integrative Orthologyregulation of ethylene-activated signaling pathway AT3G48430
GO:0033169
ISO
PLAZA Integrative Orthologyhistone H3-K9 demethylation AT3G48430
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT3G48430
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT3G48430
GO:0009612
ISO
PLAZA Integrative Orthologyresponse to mechanical stimulus AT3G48430
GO:0009873
ISO
PLAZA Integrative Orthologyethylene-activated signaling pathway AT3G48430
GO:0009741
ISO
PLAZA Integrative Orthologyresponse to brassinosteroid AT3G48430
GO:0034721
IEA
GOA Databasehistone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0040010
ISO
PLAZA Integrative Orthologypositive regulation of growth rate Os01g0907400
GO:0045815
ISO
PLAZA Integrative Orthologypositive regulation of gene expression, epigenetic Os01g0907400
GO:0035067
ISO
PLAZA Integrative Orthologynegative regulation of histone acetylation AT3G48430
GO:0006338
IBA
GOA Databasechromatin remodeling
GO:0032259
IEA
GOA Databasemethylation
GO:0016577
IEA
GOA Databasehistone demethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071558
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K27 specific) Os01g0907400
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G48430
GO:0032452
IBA
GOA Databasehistone demethylase activity
GO:0034647
IBA
GOA Databasehistone demethylase activity (H3-trimethyl-K4 specific)
GO:0008168
IEA
GOA Databasemethyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036236 Zinc finger C2H2 superfamily
IPR013087 Zinc finger C2H2-type
IPR003349 JmjN domain
IPR003347 JmjC domain
Mapman id Description
12.3.3.8.6 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM9)