Gene: Sopen03g030710

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g030710
  • Transcript Identifier Sopen03g030710.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 66481430-66489023 : negative

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g030710.1

Descriptions

  • Description Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins. | relative of early flowering 6 (REF6) | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding | INVOLVED IN: in 6 processes | LOCATED IN: nucleus | EXPRESSED IN: 8 plant structures | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase , Zinc finger, C2H2-like , Transcription factor jumonji , Zinc finger, C2H2-type , Transcription factor jumonji, JmjN , Zinc finger, C2H2-type/integrase, DNA-binding | BEST Arabidopsis thaliana protein match is: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035067
ISO
PLAZA Integrative Orthologynegative regulation of histone acetylation AT3G48430
GO:0045815
ISO
PLAZA Integrative Orthologypositive regulation of gene expression, epigenetic Os01g0907400
GO:0040010
ISO
PLAZA Integrative Orthologypositive regulation of growth rate Os01g0907400
GO:0010182
ISO
PLAZA Integrative Orthologysugar mediated signaling pathway AT3G48430
GO:0009741
ISO
PLAZA Integrative Orthologyresponse to brassinosteroid AT3G48430
GO:0009873
ISO
PLAZA Integrative Orthologyethylene-activated signaling pathway AT3G48430
GO:0009612
ISO
PLAZA Integrative Orthologyresponse to mechanical stimulus AT3G48430
GO:0009826
ISO
PLAZA Integrative Orthologyunidimensional cell growth AT3G48430
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT3G48430
GO:0033169
ISO
PLAZA Integrative Orthologyhistone H3-K9 demethylation AT3G48430
GO:0010104
ISO
PLAZA Integrative Orthologyregulation of ethylene-activated signaling pathway AT3G48430
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT3G48430

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G48430
GO:0071558
ISO
PLAZA Integrative Orthologyhistone demethylase activity (H3-K27 specific) Os01g0907400

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G48430

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003347 JmjC domain
IPR013087 Zinc finger C2H2-type
IPR036236 Zinc finger C2H2 superfamily
IPR003349 JmjN domain
Mapman id Description
12.3.3.8.6 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (PKDM9)