Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.2e-157 560.1 344 100.0
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 2.6e-99 366.3 329 64.7
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.7e-98 363.6 306 66.0
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 2.8e-98 362.8 349 55.9
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 2.5e-94 349.7 335 61.2
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 1.2e-93 347.4 344 54.9
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.6e-93 347.1 329 58.4
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 4.7e-93 345.5 328 60.7
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.0e-91 340.1 330 58.2
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 3.3e-91 339.3 328 57.0
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 5.7e-91 338.6 328 55.5
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.3e-90 337.4 327 56.3
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 3.7e-90 335.9 329 56.8
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 6.3e-90 335.1 368 50.3
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 1.1e-89 334.3 298 59.1
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.8e-89 333.6 324 56.8
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 3.1e-89 332.8 343 52.5
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 7.0e-89 331.6 329 55.3
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 1.6e-88 330.5 329 54.1
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.6e-88 330.5 328 59.8
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 2.0e-88 330.1 331 54.4
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 7.7e-88 328.2 324 53.7
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 2.9e-87 326.2 327 54.7
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 6.5e-87 325.1 327 54.7
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 1.5e-86 323.9 316 55.4
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 1.9e-86 323.6 328 52.7
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 2.5e-86 323.2 332 54.5
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 2.5e-86 323.2 256 62.5
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 3.2e-86 322.8 329 53.5
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 1.2e-85 320.9 332 53.6
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 1.6e-85 320.5 332 53.9
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.6e-85 320.5 357 51.5
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 2.1e-85 320.1 328 52.4
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 2.7e-85 319.7 316 55.4
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 3.6e-85 319.3 331 51.7
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 4.7e-85 318.9 329 52.9
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 6.1e-85 318.5 320 53.8
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 6.1e-85 318.5 249 63.1
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 8.0e-85 318.2 328 52.1
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 1.0e-84 317.8 316 55.1
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 1.4e-84 317.4 328 52.1
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.8e-84 317.0 332 54.2
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.8e-84 317.0 329 52.3
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 3.0e-84 316.2 332 53.6
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 4.0e-84 315.8 332 53.6
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 4.0e-84 315.8 331 51.1
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 6.8e-84 315.1 335 51.9
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 6.8e-84 315.1 333 52.3
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 8.8e-84 314.7 329 52.6
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 1.2e-83 314.3 416 45.4
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 1.5e-83 313.9 332 52.7
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 1.5e-83 313.9 332 52.7
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.5e-83 313.9 325 52.6
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 2.0e-83 313.5 317 53.9
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 2.0e-83 313.5 353 49.6
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 2.6e-83 313.2 326 52.1
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 7.5e-83 311.6 335 53.4
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 7.5e-83 311.6 335 53.4
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 1.3e-82 310.8 324 53.7
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 2.2e-82 310.1 326 51.8
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 2.2e-82 310.1 326 51.8
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 2.8e-82 309.7 316 52.8
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 4.8e-82 308.9 328 50.9
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 8.3e-82 308.1 328 51.8
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.4e-81 307.4 318 51.6
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.4e-81 307.4 328 51.5
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 4.1e-81 305.8 328 51.8
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 5.4e-81 305.4 335 52.5
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 5.4e-81 305.4 328 51.2
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 7.0e-81 305.1 328 50.9
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 2.7e-80 303.1 328 50.0
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 5.9e-80 302.0 355 50.1
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 1.3e-79 300.8 322 56.8
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 2.2e-79 300.1 337 51.0
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 2.9e-79 299.7 337 49.6
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 8.5e-79 298.1 298 53.0
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 2.5e-78 296.6 327 50.2
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 7.2e-78 295.0 350 48.0
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.6e-77 293.9 327 50.5
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 6.1e-77 292.0 327 48.3
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.3e-76 290.0 321 50.2
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 5.2e-76 288.9 330 50.3
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.2e-75 287.7 330 47.6
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 2.0e-75 287.0 331 48.0
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 4.4e-75 285.8 252 57.9
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 5.7e-75 285.4 330 48.8
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 3.7e-74 282.7 322 48.1
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.4e-73 280.8 333 49.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 5.4e-73 278.9 381 43.8
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 5.4e-73 278.9 336 46.7
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.6e-72 277.3 252 56.3
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 3.8e-71 272.7 311 48.9
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.4e-67 259.6 224 61.2
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.9e-66 256.5 225 60.0
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 4.9e-66 255.8 221 61.5
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.8e-65 253.8 246 56.1
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 1.5e-62 244.2 269 50.6
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 2.8e-61 240.0 322 40.7
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.5e-59 234.2 311 41.2
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 4.1e-57 226.1 253 47.8
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 9.2e-57 224.9 269 48.3
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.7e-56 223.4 312 38.5
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.0e-55 219.9 233 52.8
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 4.3e-54 216.1 240 49.6
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 1.6e-53 214.2 226 50.4
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.0e-51 207.2 326 38.0
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 7.8e-48 195.3 200 53.5
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 5.2e-44 182.6 324 35.5
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 6.2e-37 159.1 256 34.8
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.5e-35 154.5 113 66.4
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.8e-35 152.5 152 53.9
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 7.6e-35 152.1 296 38.5
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 4.2e-33 146.4 117 59.8
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 7.1e-33 145.6 176 48.3
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.2e-32 144.8 258 33.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.6e-29 133.3 78 76.9
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 4.0e-28 129.8 86 70.9
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 9.9e-27 125.2 76 73.7
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 4.9e-26 122.9 362 25.1
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 4.9e-26 122.9 76 72.4
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.7e-23 114.4 76 68.4
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.3e-15 87.4 133 41.4
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 7.4e-14 82.4 54 68.5
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 1.1e-09 68.6 46 73.9
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.9e-09 67.8 98 40.8
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 4.2e-09 66.6 111 40.5
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 7.1e-09 65.9 79 49.4
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 2.3e-07 60.8 104 40.4
Ca_29136_v3 Cicer arietinum L. HOM05D016293 ORTHO05D018978 1.5e-06 58.2 129 31.0


User provided reference genes

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