Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 8.5e-207 723.4 354 100.0
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 4.6e-104 382.1 235 81.7
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 8.5e-90 334.7 237 67.1
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.0e-87 327.8 242 65.3
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.8e-85 318.9 233 63.9
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.1e-84 316.2 241 63.9
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-83 314.3 245 63.3
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.1e-81 307.8 241 61.8
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.1e-80 303.5 234 60.7
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.9e-79 299.3 234 61.5
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.7e-79 298.5 233 60.5
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 8.8e-79 298.1 232 58.6
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.3e-78 296.2 233 60.5
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 7.4e-78 295.0 232 62.1
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 7.4e-78 295.0 230 61.7
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 9.7e-78 294.7 232 62.1
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.7e-77 293.9 230 61.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 8.2e-77 291.6 231 60.6
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.1e-76 291.2 234 59.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.8e-76 290.4 245 57.6
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.1e-76 289.7 233 59.2
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 4.1e-76 289.3 233 60.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 5.3e-76 288.9 234 57.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.3e-76 288.9 233 59.2
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 9.1e-76 288.1 230 60.9
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.5e-75 285.8 230 60.0
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 5.9e-75 285.4 233 60.9
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 7.7e-75 285.0 237 57.8
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.9e-74 283.1 235 59.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.8e-74 282.7 230 59.1
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 5.0e-74 282.3 237 57.0
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 8.5e-74 281.6 238 57.1
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.5e-74 281.6 202 65.3
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 8.5e-74 281.6 230 57.0
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 8.5e-74 281.6 234 56.8
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 8.5e-74 281.6 234 56.8
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.5e-73 280.8 230 57.8
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.5e-73 280.8 237 57.0
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.9e-73 280.4 230 57.8
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.5e-73 280.0 231 60.6
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.5e-73 280.0 245 55.5
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.5e-73 280.0 230 57.0
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.4e-73 278.1 240 58.8
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.2e-72 277.7 234 59.0
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-72 276.9 233 57.1
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.6e-72 276.2 234 57.7
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.0e-72 275.0 233 57.1
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 8.0e-72 275.0 259 54.4
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.0e-71 274.6 242 55.8
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.0e-71 274.6 230 55.2
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.0e-71 274.6 233 56.7
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.8e-71 273.9 232 57.8
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.3e-71 273.5 233 56.7
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.3e-71 273.5 230 57.0
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.3e-71 273.5 233 55.4
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 2.3e-71 273.5 233 54.9
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.0e-71 273.1 233 55.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 4.0e-71 272.7 230 59.1
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 4.0e-71 272.7 230 56.1
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 4.0e-71 272.7 234 56.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 6.7e-71 271.9 230 58.7
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.2e-70 271.2 239 54.4
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.5e-70 270.8 197 64.5
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 2.0e-70 270.4 234 56.0
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.0e-70 270.4 237 55.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.6e-70 270.0 234 54.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.6e-70 270.0 234 54.7
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.4e-70 269.2 230 57.0
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 4.4e-70 269.2 238 55.9
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.7e-70 268.9 281 49.8
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 9.7e-70 268.1 230 54.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.3e-69 267.7 233 54.5
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.2e-69 266.9 237 55.7
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.2e-69 266.9 246 55.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.3e-69 265.4 234 53.4
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 8.2e-69 265.0 233 56.2
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.4e-68 264.2 237 55.7
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.0e-68 261.9 240 55.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.1e-68 261.5 240 54.2
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.0e-67 260.4 236 53.8
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-67 260.4 233 55.4
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.5e-67 259.6 232 56.9
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 5.9e-67 258.8 236 54.2
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 5.9e-67 258.8 239 54.0
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 5.9e-67 258.8 236 54.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.7e-67 258.5 234 53.4
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.3e-66 257.7 229 55.9
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.2e-66 256.9 240 54.2
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.9e-66 256.5 234 54.3
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.9e-66 256.5 200 61.5
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 5.0e-66 255.8 233 50.6
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 6.5e-66 255.4 238 52.5
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 8.5e-66 255.0 238 51.7
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.1e-65 254.6 229 55.5
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.5e-65 254.2 233 54.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 7.2e-65 251.9 238 52.1
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.2e-65 251.9 251 49.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 7.2e-65 251.9 233 54.5
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 9.4e-65 251.5 238 52.1
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.1e-64 250.4 234 51.3
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.1e-64 250.4 230 53.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.7e-64 250.0 231 54.5
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 4.7e-64 249.2 230 54.3
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 6.1e-64 248.8 238 50.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 6.1e-64 248.8 254 50.8
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 6.1e-64 248.8 231 54.1
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 8.0e-64 248.4 270 49.6
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.0e-63 248.1 230 51.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.0e-63 248.1 235 52.3
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.4e-63 247.7 231 56.3
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.4e-63 247.7 224 53.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.8e-63 247.3 208 57.7
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.8e-63 247.3 252 50.0
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.8e-63 247.3 232 53.4
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.3e-63 246.9 241 51.9
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 3.0e-63 246.5 241 52.3
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 4.0e-63 246.1 231 52.8
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 5.2e-63 245.7 221 55.7
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.8e-63 245.4 231 54.1
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.8e-63 245.4 231 54.1
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 6.8e-63 245.4 229 53.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 6.8e-63 245.4 219 53.9
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.5e-62 244.2 230 52.2
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.0e-62 243.8 238 50.8
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.0e-62 243.8 230 52.6
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 9.8e-62 241.5 241 49.8
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 9.8e-62 241.5 241 49.8
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.3e-61 241.1 231 52.8
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.8e-61 240.0 211 54.0
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 8.3e-61 238.4 229 51.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.4e-60 237.7 237 51.1
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-60 237.7 237 51.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.1e-60 236.1 236 50.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.7e-59 233.4 229 50.7
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.2e-57 226.1 210 52.9
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 5.5e-57 225.7 231 50.6
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 8.0e-56 221.9 233 50.2
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.3e-55 220.3 233 51.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.3e-55 220.3 233 49.4
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 8.9e-55 218.4 229 49.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.0e-54 217.2 233 49.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.4e-54 216.5 254 47.2
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.9e-53 212.6 230 47.8
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 8.3e-53 211.8 256 45.3
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 9.2e-52 208.4 185 53.0
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.9e-51 205.7 236 48.3
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 5.6e-49 199.1 241 44.4
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.2e-48 198.0 224 46.0
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.1e-48 197.2 222 48.6
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.8e-48 196.8 164 56.1
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.7e-48 196.1 159 57.2
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.7e-48 196.1 232 44.4
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 5.2e-47 192.6 241 43.2
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.9e-47 191.8 158 55.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 3.7e-45 186.4 171 53.2
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 8.3e-45 185.3 158 53.8
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.9e-44 184.1 160 55.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.0e-43 180.6 258 39.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 2.8e-40 170.2 243 39.5
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-39 168.3 192 48.4
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.0e-39 166.4 200 45.0
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 5.8e-38 162.5 257 38.1
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.5e-35 153.3 126 60.3
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 3.3e-33 146.7 209 38.8
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 8.1e-32 142.1 89 80.9
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.6e-30 137.1 107 60.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 5.8e-30 136.0 99 67.7
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.3e-26 124.0 116 55.2
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 6.6e-26 122.5 115 53.0
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.3e-21 108.2 144 39.6
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 3.8e-21 106.7 166 40.4
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 7.1e-20 102.4 116 45.7
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.1e-19 100.9 146 39.7
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 4.6e-19 99.8 74 62.2
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.3e-18 98.2 86 54.7
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 7.3e-17 92.4 190 30.0
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 9.6e-17 92.0 96 47.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.2e-14 85.1 89 47.2
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-14 85.1 89 46.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.6e-11 74.7 133 33.1
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 8.7e-10 68.9 61 50.8
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 3.3e-09 67.0 181 28.2


User provided reference genes

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