Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 2.3e-176 622.1 301 100.0
SGA_v2.0_scaffold844G53665 Striga asiatica HOM05D213144 ORTHO05D006517 2.3e-51 206.8 117 89.7
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 2.0e-15 87.4 50 82.0
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 9.3e-13 78.6 50 72.0
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 4.6e-12 76.3 50 70.0
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 6.0e-12 75.9 49 69.4
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 1.3e-11 74.7 50 70.0
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.8e-11 74.3 50 70.0
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.8e-11 74.3 50 70.0
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 2.3e-11 73.9 50 68.0
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 3.0e-11 73.6 50 68.0
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 3.0e-11 73.6 56 60.7
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 3.9e-11 73.2 50 66.0
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 3.9e-11 73.2 50 66.0
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 3.9e-11 73.2 50 68.0
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 3.9e-11 73.2 50 66.0
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 5.1e-11 72.8 50 64.0
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 5.1e-11 72.8 50 68.0
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 5.1e-11 72.8 50 68.0
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 5.1e-11 72.8 50 68.0
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 5.1e-11 72.8 50 66.0
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 5.1e-11 72.8 49 65.3
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 5.1e-11 72.8 49 65.3
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 6.7e-11 72.4 50 66.0
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 6.7e-11 72.4 47 70.2
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 6.7e-11 72.4 50 62.0
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 6.7e-11 72.4 50 66.0
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 6.7e-11 72.4 50 66.0
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 8.7e-11 72.0 56 62.5
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 8.7e-11 72.0 50 64.0
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 1.1e-10 71.6 49 65.3
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 1.1e-10 71.6 50 64.0
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 1.1e-10 71.6 56 58.9
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 1.1e-10 71.6 50 68.0
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 1.1e-10 71.6 45 71.1
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 1.1e-10 71.6 50 64.0
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.1e-10 71.6 47 68.1
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 1.1e-10 71.6 50 66.0
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 1.5e-10 71.2 49 65.3
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.5e-10 71.2 47 68.1
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.9e-10 70.9 50 64.0
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 1.9e-10 70.9 50 64.0
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 1.9e-10 70.9 50 64.0
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 2.5e-10 70.5 56 58.9
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 2.5e-10 70.5 50 62.0
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.3e-10 70.1 50 64.0
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 3.3e-10 70.1 49 63.3
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 3.3e-10 70.1 49 63.3
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 3.3e-10 70.1 49 63.3
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 3.3e-10 70.1 50 64.0
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 3.3e-10 70.1 49 63.3
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 3.3e-10 70.1 56 57.1
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.3e-10 70.1 54 61.1
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 3.3e-10 70.1 49 63.3
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 3.3e-10 70.1 50 60.0
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 3.3e-10 70.1 50 60.0
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 4.3e-10 69.7 50 64.0
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 4.3e-10 69.7 56 58.9
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 4.3e-10 69.7 48 62.5
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 5.6e-10 69.3 50 62.0
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 5.6e-10 69.3 50 62.0
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 5.6e-10 69.3 50 64.0
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 5.6e-10 69.3 50 64.0
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 5.6e-10 69.3 53 60.4
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 5.6e-10 69.3 50 64.0
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 5.6e-10 69.3 50 64.0
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 5.6e-10 69.3 50 62.0
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 7.4e-10 68.9 50 62.0
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 7.4e-10 68.9 47 66.0
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 7.4e-10 68.9 49 61.2
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 7.4e-10 68.9 49 61.2
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 7.4e-10 68.9 49 61.2
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 7.4e-10 68.9 50 64.0
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 7.4e-10 68.9 50 64.0
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 7.4e-10 68.9 50 62.0
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 7.4e-10 68.9 50 60.0
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 9.6e-10 68.6 48 62.5
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 9.6e-10 68.6 50 64.0
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.3e-09 68.2 50 60.0
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.3e-09 68.2 47 63.8
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.3e-09 68.2 45 66.7
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 1.6e-09 67.8 49 61.2
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.6e-09 67.8 49 61.2
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 1.6e-09 67.8 47 61.7
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 2.1e-09 67.4 47 61.7
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 2.1e-09 67.4 65 47.7
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 2.1e-09 67.4 47 63.8
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 2.8e-09 67.0 50 60.0
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.8e-09 66.2 42 66.7
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 4.8e-09 66.2 42 66.7
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 1.8e-08 64.3 45 62.2
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.4e-08 63.9 48 60.4
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 2.4e-08 63.9 40 67.5
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 9.0e-08 62.0 41 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.6e-07 60.5 48 54.2
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 2.6e-07 60.5 48 60.4
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 2.6e-07 60.5 48 60.4
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 4.5e-07 59.7 49 57.1
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 1.0e-06 58.5 47 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.9e-06 57.0 148 29.1
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 6.5e-06 55.8 42 54.8


User provided reference genes

Program Settings