Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 5.7e-141 504.2 251 100.0
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.2e-103 380.2 235 81.7
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.3e-79 300.4 234 62.8
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.7e-76 290.0 235 61.3
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 6.5e-76 288.1 231 62.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-75 287.0 246 60.2
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.2e-75 285.4 250 59.2
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 5.1e-73 278.5 235 58.3
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 8.7e-73 277.7 239 57.7
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.3e-71 273.9 237 59.1
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.8e-71 272.7 247 57.5
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 3.7e-71 272.3 237 59.1
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 4.8e-71 271.9 235 58.3
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.2e-71 271.2 241 56.8
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.2e-71 271.2 231 57.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.1e-70 270.8 235 57.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.4e-70 270.4 235 57.9
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.8e-70 270.0 239 55.6
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 6.9e-70 268.1 240 56.7
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.5e-69 265.4 239 56.5
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 4.5e-69 265.4 235 55.3
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 5.8e-69 265.0 235 59.1
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.6e-69 264.6 235 55.3
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.6e-69 264.6 235 55.3
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.0e-68 264.2 237 56.1
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.0e-68 264.2 235 54.9
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.3e-68 263.8 246 56.1
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.3e-68 263.8 235 54.9
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.7e-68 263.5 231 56.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 1.7e-68 263.5 236 56.4
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.2e-68 263.1 247 55.1
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 2.9e-68 262.7 231 56.3
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.8e-68 262.3 235 57.0
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.1e-67 260.8 235 55.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.4e-67 260.4 235 55.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 3.2e-67 259.2 237 54.9
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.2e-67 259.2 235 58.3
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 5.5e-67 258.5 231 56.3
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 5.5e-67 258.5 235 56.2
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 7.2e-67 258.1 238 53.4
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-66 257.3 238 56.3
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.6e-66 256.9 247 53.8
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-66 256.9 206 62.1
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.1e-66 256.5 249 53.0
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 2.7e-66 256.1 238 54.2
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.7e-66 256.1 231 54.5
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 2.7e-66 256.1 235 54.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.7e-66 256.1 237 55.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.5e-66 255.8 241 55.6
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 4.6e-66 255.4 231 57.6
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 6.1e-66 255.0 249 52.6
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 6.1e-66 255.0 231 54.1
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.9e-66 254.6 250 55.2
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.8e-65 253.4 238 54.6
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.3e-65 253.1 238 55.5
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.3e-65 253.1 248 52.8
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 8.7e-65 251.1 236 55.5
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.9e-64 250.0 235 52.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.3e-64 248.8 242 53.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.7e-64 248.4 235 54.9
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.2e-63 246.5 232 53.4
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.2e-63 246.5 232 53.4
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.2e-63 246.5 237 52.3
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.7e-63 245.7 235 54.9
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 3.7e-63 245.7 251 52.6
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.8e-63 245.4 237 51.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.2e-63 244.6 240 52.5
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-62 243.8 201 61.2
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.4e-62 243.8 239 52.3
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.4e-62 243.0 237 51.5
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.4e-62 243.0 235 51.9
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.1e-62 242.7 232 52.2
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.1e-62 242.3 231 54.1
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.1e-62 242.3 231 54.1
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 5.3e-62 241.9 237 54.4
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.0e-62 241.1 232 53.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 9.0e-62 241.1 247 51.4
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.2e-61 240.7 243 51.9
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.5e-61 240.4 237 51.5
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.6e-61 239.6 208 58.7
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 3.4e-61 239.2 239 51.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.9e-61 238.4 235 52.3
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 7.7e-61 238.0 240 51.7
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 7.7e-61 238.0 240 51.7
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.7e-60 236.9 240 51.7
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 2.2e-60 236.5 249 51.0
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.2e-60 236.5 233 51.5
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.8e-60 235.7 236 52.1
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 3.8e-60 235.7 230 52.6
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 6.5e-60 235.0 204 56.9
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.5e-60 235.0 236 53.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 8.5e-60 234.6 236 51.7
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.1e-59 234.2 235 48.9
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.9e-59 233.4 243 51.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-59 233.4 250 49.6
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.5e-59 233.0 231 50.6
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.5e-59 233.0 240 49.6
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.5e-59 233.0 230 52.2
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.2e-59 232.6 240 50.4
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 3.2e-59 232.6 232 51.3
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.5e-59 231.9 240 50.0
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.2e-59 231.5 231 52.8
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.2e-59 231.5 231 52.8
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.2e-58 230.7 228 51.3
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.2e-58 230.7 232 50.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.2e-58 230.7 232 50.0
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.6e-58 230.3 232 52.6
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.6e-58 230.3 237 49.8
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.6e-58 230.3 232 50.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.1e-58 229.9 249 50.2
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.7e-58 229.6 231 52.8
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 3.6e-58 229.2 250 49.6
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.1e-58 228.4 240 50.4
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 6.1e-58 228.4 225 53.3
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 6.1e-58 228.4 240 50.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.9e-58 228.0 250 48.8
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.0e-57 227.6 237 51.5
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.0e-57 227.6 250 48.8
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.0e-57 227.6 233 50.2
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.4e-57 227.3 235 50.2
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.9e-57 225.7 243 49.4
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 6.7e-57 224.9 229 50.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.1e-56 224.2 230 51.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.1e-56 224.2 230 51.3
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.1e-56 224.2 234 48.7
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.0e-56 223.4 240 48.3
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.0e-56 223.4 240 48.3
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-56 223.4 213 54.0
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 5.7e-56 221.9 231 47.6
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 5.7e-56 221.9 236 50.4
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 7.4e-56 221.5 240 48.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.8e-55 219.5 231 50.6
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 4.8e-55 218.8 231 49.8
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 4.1e-54 215.7 235 49.4
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.0e-53 213.4 236 48.3
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.8e-52 209.1 239 48.5
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 5.0e-52 208.8 231 49.4
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.4e-51 207.2 235 48.5
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.9e-51 206.8 212 50.5
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.6e-50 203.8 235 46.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.9e-50 201.4 204 50.5
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.0e-49 201.1 227 48.5
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 5.1e-49 198.7 244 44.7
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 6.7e-49 198.4 257 44.7
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 8.8e-49 198.0 236 44.5
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.7e-47 193.7 235 45.1
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.8e-47 193.0 243 43.6
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.8e-47 192.2 246 45.9
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.1e-46 189.5 162 57.4
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.0e-45 186.8 226 46.5
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.5e-45 185.7 157 55.4
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 6.5e-44 181.8 268 39.2
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 5.5e-43 178.7 240 42.1
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 5.5e-43 178.7 166 55.4
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.6e-42 177.2 162 54.3
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.7e-42 176.4 262 40.1
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 8.8e-41 171.4 201 45.3
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.3e-39 167.5 174 51.1
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.3e-39 167.5 266 37.6
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.1e-38 164.5 240 39.2
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.2e-35 152.5 208 42.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.4e-35 151.4 195 45.6
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.0e-33 147.9 133 54.9
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 3.0e-33 146.4 89 80.9
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.7e-28 130.6 212 39.2
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.2e-28 130.2 124 54.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 8.5e-28 128.3 91 68.1
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.5e-27 126.7 119 51.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.8e-25 120.6 109 56.9
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 3.3e-19 99.8 166 38.6
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 4.7e-18 95.9 74 59.5
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 4.7e-18 95.9 119 47.1
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 3.0e-17 93.2 120 42.5
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 8.9e-17 91.7 186 30.6
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 8.9e-17 91.7 146 35.6
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.1e-14 84.7 99 48.5
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 4.1e-14 82.8 87 51.7
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-12 78.2 91 44.0
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.3e-11 73.2 82 47.6
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 7.3e-11 72.0 271 27.3
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.3e-09 67.0 62 51.6


User provided reference genes

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