Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 1.6e-211 739.2 389 100.0
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.4e-157 560.1 391 74.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.6e-156 555.8 391 74.2
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.9e-151 539.7 392 72.2
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 4.2e-151 538.5 391 72.6
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 4.0e-149 531.9 391 71.6
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.3e-147 526.9 391 69.8
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.3e-147 526.9 403 69.5
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 4.9e-147 525.0 401 68.6
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 6.3e-147 524.6 391 70.6
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 6.3e-147 524.6 391 68.8
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.4e-146 522.7 402 69.4
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 4.1e-146 521.9 391 69.8
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 4.1e-146 521.9 404 69.3
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 5.4e-146 521.5 401 70.3
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 5.4e-146 521.5 392 69.4
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 7.0e-146 521.2 401 70.8
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 9.2e-146 520.8 401 70.8
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 3.5e-145 518.8 402 68.7
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.7e-144 516.5 401 70.6
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 5.0e-144 515.0 391 69.8
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 8.6e-144 514.2 391 68.8
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 8.6e-144 514.2 394 69.0
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 8.6e-144 514.2 393 68.4
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 2.5e-143 512.7 394 69.3
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 9.5e-143 510.8 398 66.8
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 9.5e-143 510.8 391 67.8
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.2e-142 510.4 398 66.6
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.1e-142 509.6 397 67.0
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 3.6e-142 508.8 391 67.3
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 4.7e-142 508.4 398 66.6
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 8.0e-142 507.7 398 66.3
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 8.0e-142 507.7 398 66.3
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 8.0e-142 507.7 392 69.1
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.8e-141 506.5 402 67.4
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.8e-141 506.5 389 67.1
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.8e-141 506.5 401 69.1
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 3.1e-141 505.8 401 68.8
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 5.2e-141 505.0 407 66.1
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 8.9e-141 504.2 390 67.7
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 2.6e-140 502.7 398 65.8
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 2.6e-140 502.7 398 65.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 9.8e-140 500.7 398 66.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 9.8e-140 500.7 390 65.9
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 9.8e-140 500.7 392 66.6
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.3e-139 500.4 398 65.8
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 6.4e-139 498.0 394 66.5
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 6.4e-139 498.0 398 65.6
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 6.4e-139 498.0 397 65.2
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 8.3e-139 497.7 401 68.1
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 5.4e-138 495.0 401 63.6
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 5.4e-138 495.0 389 66.6
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 7.0e-138 494.6 391 67.0
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 7.0e-138 494.6 398 65.1
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.6e-137 493.4 401 64.1
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.6e-137 493.4 392 65.1
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 2.0e-137 493.0 402 64.2
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.7e-137 492.7 402 63.7
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 4.6e-137 491.9 400 64.8
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 7.8e-137 491.1 393 66.7
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 7.8e-137 491.1 389 65.8
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.0e-136 490.7 389 67.1
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 3.0e-136 489.2 408 64.5
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.1e-135 487.3 398 64.6
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.5e-135 486.1 394 65.0
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 7.3e-135 484.6 412 61.9
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.6e-134 483.4 408 62.5
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.6e-134 483.4 401 64.1
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.8e-134 482.6 393 65.6
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 1.1e-133 480.7 392 64.8
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 7.5e-132 474.6 378 65.1
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 2.2e-131 473.0 392 64.8
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 2.9e-131 472.6 393 64.9
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.7e-131 472.2 391 63.7
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 6.4e-131 471.5 393 64.9
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 8.3e-131 471.1 412 60.2
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.3e-131 471.1 389 63.8
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.2e-129 467.2 392 63.8
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 4.6e-129 465.3 394 62.9
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 6.0e-129 464.9 392 63.3
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.0e-128 464.2 399 60.4
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 3.0e-128 462.6 410 60.2
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 3.9e-128 462.2 410 60.2
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 6.6e-128 461.5 392 63.3
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 6.6e-128 461.5 392 63.5
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-127 460.3 393 61.8
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.9e-127 459.9 406 59.9
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 3.3e-127 459.1 406 59.4
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 4.3e-127 458.8 393 61.6
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.8e-126 456.1 381 62.7
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 2.8e-126 456.1 393 61.6
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 6.8e-125 451.4 392 62.2
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 3.4e-124 449.1 392 62.5
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 3.4e-124 449.1 392 61.7
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 7.6e-124 448.0 395 60.8
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 7.6e-124 448.0 392 61.5
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.3e-123 447.2 392 64.3
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.9e-123 446.0 406 58.6
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 6.4e-123 444.9 395 60.0
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.3e-123 444.5 340 68.2
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 8.3e-123 444.5 392 60.5
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 2.4e-122 443.0 395 60.3
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 7.1e-122 441.4 340 69.7
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 6.0e-121 438.3 392 61.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.9e-120 435.6 376 64.1
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 8.6e-120 434.5 390 64.1
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.3e-119 432.6 387 59.2
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 7.3e-119 431.4 318 73.6
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 8.9e-117 424.5 392 59.9
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 4.9e-115 418.7 391 56.5
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 1.4e-114 417.2 407 57.2
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 1.6e-113 413.7 390 55.9
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 6.0e-113 411.8 344 62.2
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 3.0e-112 409.5 378 60.6
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.8e-110 402.1 389 56.8
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.9e-107 392.9 343 62.4
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.7e-105 386.3 340 61.8
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.3e-104 384.0 415 49.6
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 4.2e-98 362.5 403 51.9
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 5.1e-96 355.5 387 51.4
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 7.4e-95 351.7 278 63.3
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 7.4e-95 351.7 272 64.3
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 4.8e-94 349.0 317 59.0
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.4e-77 293.5 216 74.1
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 2.0e-63 247.3 278 50.7
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 9.7e-63 245.0 189 69.3
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.7e-62 244.2 178 74.2
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.1e-61 241.5 393 38.9
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 2.2e-59 233.8 280 47.1
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 4.7e-57 226.1 234 50.4
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 6.1e-57 225.7 340 42.6
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 1.1e-53 214.9 322 40.7
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.1e-49 200.7 161 67.7
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.0e-49 198.7 206 54.9
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 5.4e-45 186.0 206 52.9
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.6e-44 184.5 209 48.8
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 6.1e-41 172.6 228 39.9
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 5.0e-35 152.9 144 61.1
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-34 151.8 144 60.4
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.5e-34 151.4 163 46.6
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.0e-31 141.0 120 66.7
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 3.0e-27 127.1 91 76.9
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 9.5e-26 122.1 93 60.2
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.2e-20 105.1 118 46.6
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 6.0e-20 102.8 101 57.4
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 3.0e-19 100.5 182 39.0
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.5e-15 88.2 49 89.8
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 1.5e-15 88.2 49 89.8
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.4e-13 81.6 100 44.0


User provided reference genes

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