Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 3817.3 1911 100.0
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 2574.3 1923 67.5
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 2511.5 1919 65.7
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 2119.4 1875 58.2
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2055.8 1964 55.3
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2011.1 1961 54.5
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1989.2 1945 54.4
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1974.1 1966 52.7
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1960.7 1940 53.0
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1959.1 1931 53.7
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1955.6 1965 52.6
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1947.9 1966 52.7
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1938.7 1968 52.3
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1927.1 1961 52.5
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1924.8 2014 51.6
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1899.8 1936 52.4
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1886.3 1960 51.4
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1877.8 1963 51.4
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1874.8 1961 50.7
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1873.6 1968 51.0
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1864.4 1970 51.0
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1864.0 1969 50.7
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1860.1 1959 50.5
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1858.2 1998 49.9
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1854.3 1967 50.7
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1843.9 1965 50.6
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1839.3 1965 50.4
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1836.2 1964 50.3
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1833.5 1959 49.7
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1821.2 1958 49.2
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1813.5 1961 49.9
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1811.2 1796 53.4
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1806.2 1955 49.3
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1803.5 1956 49.2
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1800.0 1952 49.4
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1798.9 2003 48.3
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1797.7 1954 49.2
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1795.0 1974 49.9
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1793.9 1970 50.0
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1781.9 1945 49.7
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1780.0 1995 49.4
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1768.1 1845 51.1
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1767.7 1945 48.1
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1763.0 1952 47.8
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1762.3 1967 48.7
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1760.7 1947 49.2
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1760.0 1989 48.1
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1743.8 1954 48.0
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1739.5 1968 48.5
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1738.0 2136 46.4
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1735.3 1989 47.9
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1733.8 1967 48.1
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1731.5 1942 49.1
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1727.2 1967 48.0
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1709.1 1957 47.7
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1700.6 2087 45.5
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1694.1 1906 48.6
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1689.5 1956 47.5
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1688.7 1987 47.3
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1688.7 1963 46.9
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1677.1 2456 40.6
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1676.4 1975 46.8
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1674.4 1972 47.8
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1670.2 1972 47.0
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1660.6 1949 46.7
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1649.8 1971 45.7
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1645.6 1973 45.6
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1628.6 1956 45.9
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1626.3 1955 46.1
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1618.2 1977 46.6
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1604.7 1955 45.1
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1604.3 1963 45.8
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1600.5 1953 44.8
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1599.3 1956 45.3
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1593.2 1950 45.4
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1582.0 1952 44.8
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1580.5 1956 44.7
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1577.4 1949 45.4
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1572.4 1954 44.5
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1567.7 1944 44.9
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1565.4 1965 44.8
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1563.1 1942 45.0
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1561.6 1975 44.9
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1559.7 1951 45.1
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1558.9 1945 44.9
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1558.1 1965 44.9
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1555.8 1943 44.7
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1547.3 1956 44.5
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1509.2 1867 45.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1507.7 1906 45.3
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1481.5 2016 42.2
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1468.0 1945 43.2
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1464.1 1980 41.9
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1408.3 1320 55.2
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1333.2 1692 44.0
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1328.2 2018 39.5
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1315.8 1206 55.8
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1305.4 1978 39.3
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1249.6 1566 43.8
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1214.9 1658 42.6
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1201.0 1979 37.2
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1157.9 1094 55.0
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 0.0e+00 1110.5 1087 53.4
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 2.7e-307 1059.7 1156 49.5
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.5e-286 990.7 2107 31.8
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 6.0e-283 978.8 888 57.3
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 1.0e-282 978.0 2081 32.2
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 2.1e-267 927.2 2025 32.6
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 2.3e-242 844.0 1959 31.0
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.0e-222 777.7 793 52.8
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 6.4e-176 623.2 975 37.0
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.8e-112 411.4 745 35.6
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 3.8e-67 261.9 242 53.7
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 3.5e-65 255.4 812 26.6
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.0e-64 253.8 187 69.5
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 2.4e-53 216.1 208 56.2
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 2.0e-52 213.0 152 66.4
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 2.2e-51 209.5 216 44.0
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-50 204.1 637 28.1
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.5e-47 196.1 218 43.1
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.7e-43 183.3 138 68.1
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 2.9e-35 156.0 400 27.0
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.9e-34 153.3 105 67.6
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 1.2e-33 150.6 164 43.3
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 4.5e-28 132.1 239 31.0
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 7.2e-26 124.8 126 57.1
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 8.8e-24 117.9 97 59.8
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 2.0e-23 116.7 104 61.5
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 4.1e-21 109.0 87 59.8
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 5.5e-18 98.6 176 36.9
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 4.0e-16 92.4 83 60.2
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 7.5e-15 88.2 129 32.6
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.6e-12 80.5 62 56.5
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.3e-11 77.4 62 54.8
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 2.9e-11 76.3 162 29.0
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 2.6e-07 63.2 80 45.0


User provided reference genes

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