Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 7.3e-146 520.8 310 100.0
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.3e-82 309.3 262 80.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.2e-77 292.7 241 78.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.8e-75 287.0 160 92.5
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.3e-74 282.7 271 66.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.1e-72 275.8 244 71.3
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.0e-71 273.5 252 69.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.9e-71 271.9 261 73.9
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.9e-71 271.9 244 70.5
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 5.0e-70 268.9 246 69.1
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 5.0e-70 268.9 277 68.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.6e-68 263.8 172 79.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.6e-68 263.8 172 79.7
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.1e-68 263.5 170 80.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.1e-68 263.5 172 80.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 6.1e-68 261.9 165 83.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.0e-67 261.2 177 79.7
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.0e-67 261.2 171 79.5
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.4e-67 260.8 171 78.9
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.4e-67 260.8 170 79.4
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.2e-67 258.8 250 65.2
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 6.8e-67 258.5 247 65.6
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 6.8e-67 258.5 245 62.0
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.2e-66 257.7 171 78.9
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.2e-66 257.7 250 63.6
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.2e-66 257.7 172 78.5
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 2.0e-66 256.9 250 65.2
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.6e-66 256.5 248 64.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.6e-66 256.5 165 81.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.6e-66 256.5 242 72.7
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.4e-66 255.8 267 64.4
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.7e-66 255.4 164 82.3
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 5.7e-66 255.4 164 82.3
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.3e-65 254.2 232 72.4
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.7e-65 253.8 172 77.9
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.7e-65 253.8 249 65.5
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.2e-65 253.4 168 79.2
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.8e-65 253.1 167 77.2
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.7e-65 252.7 163 81.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.7e-65 252.7 154 85.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.7e-65 252.7 248 64.9
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 3.7e-65 252.7 249 65.9
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.8e-65 252.3 166 80.1
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 4.8e-65 252.3 168 82.1
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.1e-64 251.1 247 66.4
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.4e-64 250.8 243 67.5
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.8e-64 250.4 166 81.3
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.8e-64 250.4 246 67.5
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.4e-64 250.0 247 65.6
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 2.4e-64 250.0 154 83.8
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.1e-64 249.6 154 84.4
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 3.1e-64 249.6 163 81.0
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 5.4e-64 248.8 246 65.4
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 9.1e-64 248.1 165 81.2
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 9.1e-64 248.1 242 74.4
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 9.1e-64 248.1 169 77.5
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.1e-64 248.1 249 68.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.6e-63 247.3 166 79.5
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.6e-63 247.3 240 63.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.0e-63 246.9 169 77.5
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.0e-63 246.9 250 64.4
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.0e-63 246.9 258 69.8
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.0e-63 246.9 170 77.6
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.7e-63 246.5 164 78.7
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 4.5e-63 245.7 164 78.7
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 4.5e-63 245.7 164 78.7
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 4.5e-63 245.7 164 78.7
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.5e-63 245.7 166 80.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.7e-63 245.0 150 84.7
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.7e-63 245.0 253 63.6
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.7e-63 245.0 170 79.4
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.0e-62 244.6 178 75.3
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.0e-62 244.6 249 66.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.3e-62 244.2 247 71.3
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.3e-62 244.2 246 66.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.3e-62 244.2 246 66.7
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.7e-62 243.8 161 79.5
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.7e-62 243.8 161 79.5
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.3e-62 243.4 150 83.3
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.3e-62 243.4 177 75.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-62 243.0 164 77.4
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.9e-62 243.0 164 77.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.9e-62 243.0 175 74.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.8e-62 242.7 164 77.4
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 5.0e-62 242.3 157 79.6
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.0e-62 242.3 157 79.6
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.0e-62 242.3 168 78.6
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 6.5e-62 241.9 151 82.1
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.5e-62 241.9 163 80.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.1e-61 241.1 150 81.3
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.5e-61 240.7 242 61.6
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.5e-61 240.7 234 68.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.5e-61 240.7 171 75.4
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.5e-61 240.7 241 69.7
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.5e-61 240.7 251 66.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.5e-61 240.7 244 67.2
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.9e-61 240.4 154 80.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.5e-61 240.0 201 69.2
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.3e-61 239.6 246 65.9
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 3.3e-61 239.6 245 69.0
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.2e-61 239.2 170 75.9
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.2e-61 239.2 170 75.9
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 7.2e-61 238.4 153 83.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 7.2e-61 238.4 140 87.1
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 9.5e-61 238.0 152 81.6
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.8e-60 236.5 147 81.6
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.8e-60 236.5 151 80.8
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.7e-60 235.7 252 63.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 4.7e-60 235.7 242 60.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 6.1e-60 235.3 270 60.0
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.4e-59 234.2 154 77.9
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.8e-59 233.8 242 64.9
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.8e-59 233.8 145 83.4
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.2e-59 232.3 158 75.9
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 6.8e-59 231.9 139 85.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 3.4e-58 229.6 150 79.3
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.4e-58 229.6 260 64.2
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.4e-58 229.6 134 87.3
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.8e-58 228.0 153 77.1
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.8e-58 228.0 153 77.1
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.3e-57 227.6 151 78.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.3e-57 227.6 151 82.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 2.2e-57 226.9 149 80.5
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.7e-57 226.1 154 78.6
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 6.3e-57 225.3 243 63.4
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.1e-56 223.0 266 59.4
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 4.1e-56 222.6 153 74.5
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.2e-55 221.1 254 57.5
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 5.0e-54 215.7 200 64.0
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 8.6e-54 214.9 263 64.6
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.1e-53 214.5 165 72.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 3.3e-53 213.0 236 58.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 8.9e-51 204.9 266 61.3
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 5.8e-50 202.2 130 80.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.7e-49 199.5 245 59.2
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.7e-49 199.5 245 59.2
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.7e-46 190.7 246 52.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 3.0e-46 189.9 144 72.9
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 7.3e-45 185.3 180 62.2
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 7.3e-45 185.3 157 64.3
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-43 181.0 120 78.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.1e-43 179.9 134 73.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.2e-42 177.9 149 62.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.7e-41 174.1 199 59.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 6.4e-41 172.2 168 61.3
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 4.1e-40 169.5 110 77.3
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 9.2e-40 168.3 202 53.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.3e-38 163.7 244 59.0
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 4.3e-37 159.5 121 66.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 6.8e-35 152.1 94 79.8
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.6e-31 141.0 95 74.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.6e-31 141.0 103 69.9
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.9e-29 134.0 137 56.2
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.9e-27 125.2 286 40.2
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.0e-26 124.0 286 40.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.0e-26 124.0 286 40.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.9e-24 117.5 301 41.9
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.1e-16 91.7 245 42.9
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 7.8e-15 85.5 234 44.4
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 8.7e-14 82.0 69 65.2
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.3e-13 79.0 52 69.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.2e-09 67.4 102 53.9
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 3.8e-09 66.6 62 62.9


User provided reference genes

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