Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 7.0e-207 723.8 380 100.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 3.4e-129 465.7 381 63.5
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.9e-128 462.6 381 63.3
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 4.9e-128 461.8 381 63.3
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 8.4e-128 461.1 378 62.4
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.4e-127 460.3 379 61.5
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 2.4e-127 459.5 385 62.1
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 5.5e-127 458.4 382 62.6
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 7.1e-127 458.0 384 62.2
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 7.1e-127 458.0 379 62.0
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 9.3e-127 457.6 385 61.8
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 9.3e-127 457.6 382 62.8
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 2.7e-126 456.1 381 62.7
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 4.6e-126 455.3 382 60.7
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 4.6e-126 455.3 387 61.8
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.6e-126 455.3 379 62.5
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 4.6e-126 455.3 379 63.6
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 4.6e-126 455.3 389 62.0
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 6.0e-126 454.9 380 61.8
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 6.0e-126 454.9 381 60.9
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 1.0e-125 454.1 383 62.4
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.8e-125 453.4 380 62.4
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.0e-125 452.6 381 60.6
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 3.9e-125 452.2 380 61.1
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 6.7e-125 451.4 381 62.7
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.7e-125 451.4 382 62.0
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 8.7e-125 451.1 379 63.1
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.5e-124 450.3 380 62.4
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 2.5e-124 449.5 379 60.9
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 3.3e-124 449.1 388 60.6
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 5.6e-124 448.4 380 62.1
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 5.6e-124 448.4 382 61.0
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 9.6e-124 447.6 381 63.0
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.1e-123 446.4 378 62.2
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 3.7e-123 445.7 382 61.5
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 6.2e-123 444.9 379 63.9
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 1.4e-122 443.7 379 60.2
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.8e-122 443.4 380 60.5
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 1.8e-122 443.4 379 63.6
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 2.4e-122 443.0 381 61.7
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 4.0e-122 442.2 379 60.7
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 5.3e-122 441.8 381 62.5
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.5e-121 440.3 379 59.6
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.5e-121 440.3 381 58.8
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.0e-121 439.9 381 58.8
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.0e-121 439.9 379 59.6
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 2.0e-121 439.9 392 58.7
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.6e-121 439.5 379 60.7
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.6e-121 439.5 379 60.7
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 2.6e-121 439.5 384 60.7
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 3.4e-121 439.1 380 59.7
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 4.5e-121 438.7 379 60.7
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 5.8e-121 438.3 379 59.4
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 7.6e-121 438.0 387 59.9
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.0e-120 437.6 387 59.9
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.7e-120 436.8 379 60.4
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.7e-120 436.8 379 60.4
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.2e-120 436.4 381 60.9
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 2.9e-120 436.0 378 59.8
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.9e-120 436.0 380 59.2
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 3.8e-120 435.6 379 60.9
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 3.8e-120 435.6 386 59.8
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 4.9e-120 435.3 379 60.2
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 6.5e-120 434.9 373 62.5
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 8.4e-120 434.5 381 61.4
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.1e-119 434.1 387 59.9
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.4e-119 433.7 381 58.0
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 2.5e-119 433.0 380 60.8
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 4.2e-119 432.2 381 57.7
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.6e-118 430.3 378 60.3
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 2.1e-118 429.9 390 57.7
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.7e-118 429.5 378 60.6
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 6.0e-118 428.3 382 58.9
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 7.9e-118 427.9 397 57.7
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-117 426.4 376 56.6
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 2.3e-117 426.4 380 57.6
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 8.7e-117 424.5 372 58.9
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 8.7e-117 424.5 382 56.5
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.7e-117 424.5 381 58.8
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 5.7e-116 421.8 381 58.3
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.3e-115 420.6 393 55.5
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 2.2e-115 419.9 379 57.3
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 2.8e-115 419.5 382 57.3
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 2.8e-115 419.5 384 57.0
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 8.2e-115 417.9 378 57.1
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 1.8e-114 416.8 378 57.4
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.8e-114 416.8 381 57.7
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.1e-114 415.6 391 56.0
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 5.3e-114 415.2 381 57.7
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.9e-114 414.8 407 57.2
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.5e-113 413.7 379 56.2
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 3.4e-113 412.5 381 58.3
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 7.7e-113 411.4 380 57.1
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 2.9e-112 409.5 379 55.4
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 5.0e-112 408.7 381 56.2
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 6.5e-112 408.3 380 57.1
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.1e-111 407.5 379 55.4
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.1e-111 407.5 379 56.5
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.4e-111 407.1 381 56.4
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.9e-111 406.8 386 55.7
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 1.2e-110 404.1 380 56.3
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.1e-110 403.3 379 54.4
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 2.1e-110 403.3 390 57.7
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.5e-108 397.1 381 55.4
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 7.4e-108 394.8 381 59.3
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 2.2e-107 393.3 379 54.9
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 6.3e-107 391.7 379 53.8
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.0e-104 384.4 375 55.7
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 8.5e-104 381.3 378 53.2
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.9e-103 380.2 331 62.5
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 3.6e-102 375.9 377 53.1
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.9e-101 372.5 335 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.5e-100 370.5 380 52.1
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.4e-98 364.0 297 64.6
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.2e-97 360.9 370 55.4
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.2e-97 360.9 337 59.1
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 7.7e-97 358.2 354 52.3
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.2e-94 350.9 373 51.5
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.0e-85 321.2 384 49.0
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.3e-84 316.2 335 51.9
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.2e-80 303.5 292 54.8
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.0e-77 292.7 198 76.8
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 6.8e-77 292.0 323 48.6
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 4.1e-74 282.7 311 48.6
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 6.3e-67 258.8 161 78.9
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 8.3e-67 258.5 386 39.6
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.5e-65 252.7 155 81.9
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 2.5e-63 246.9 244 52.5
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 8.0e-62 241.9 330 45.2
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-57 228.0 250 50.0
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 3.7e-51 206.5 205 53.7
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 3.5e-49 199.9 235 46.4
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 7.8e-49 198.7 181 53.6
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.3e-47 193.4 159 64.8
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 7.1e-42 175.6 173 56.1
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.5e-39 167.9 173 54.9
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.2e-38 164.9 223 39.9
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 5.4e-34 149.4 133 62.4
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-33 148.3 133 61.7
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.2e-30 136.0 121 60.3
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 5.3e-29 132.9 81 82.7
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 2.5e-23 114.0 172 37.8
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.6e-22 111.3 84 66.7
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 3.7e-14 83.6 51 76.5
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 4.8e-14 83.2 86 45.3
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 6.2e-14 82.8 162 35.8
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.8e-13 81.3 135 39.3
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.3e-11 75.1 45 73.3
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 4.6e-09 66.6 161 29.2


User provided reference genes

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