Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_29563 Sequoiadendron giganteum HOM05D004901 ORTHO05D005592 9.7e-239 829.7 408 100.0
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 2.2e-81 307.0 238 68.1
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 3.7e-81 306.2 237 67.5
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 4.9e-81 305.8 239 65.7
Thecc.08G186400 Theobroma cacao HOM05D004901 ORTHO05D005592 1.1e-80 304.7 238 66.4
PSO170G4536 Papaver somniferum HOM05D004901 ORTHO05D005592 4.1e-80 302.8 238 67.2
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 5.4e-80 302.4 238 67.2
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 1.2e-79 301.2 238 66.0
Pp3c20_9530 Physcomitrium patens HOM05D004901 ORTHO05D005592 1.2e-79 301.2 307 55.7
CSS0009856 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 2.7e-79 300.1 279 57.7
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 1.7e-78 297.4 252 63.1
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 5.0e-78 295.8 239 66.1
Cc00_g06540 Coffea canephora HOM05D004901 ORTHO05D005592 6.6e-78 295.4 242 64.0
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 6.6e-78 295.4 281 56.6
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 8.6e-78 295.0 238 64.3
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 8.6e-78 295.0 237 65.0
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 1.5e-77 294.3 237 65.0
Duzib177G0087 Durio zibethinus HOM05D004901 ORTHO05D005592 1.9e-77 293.9 238 64.7
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 1.9e-77 293.9 238 66.8
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 2.5e-77 293.5 237 64.6
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 5.6e-77 292.4 252 61.9
Rhsim11G0056100 Rhododendron simsii HOM05D004901 ORTHO05D005592 1.2e-76 291.2 285 55.8
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 1.6e-76 290.8 247 62.8
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 2.1e-76 290.4 238 63.4
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 3.6e-76 289.7 233 65.7
AagrBONN_evm.TU.Sc2ySwM_228.534 Anthoceros agrestis HOM05D004901 ORTHO05D005592 4.7e-76 289.3 255 62.7
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 6.1e-76 288.9 264 59.5
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 1.4e-75 287.7 241 62.7
Haze_13904 Corylus avellana HOM05D004901 ORTHO05D005592 8.9e-75 285.0 261 58.6
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 2.6e-74 283.5 243 62.1
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 2.6e-74 283.5 267 58.8
CsaV3_2G033030 Cucumis sativus L. HOM05D004901 ORTHO05D005592 2.6e-74 283.5 266 58.6
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 2.6e-74 283.5 241 63.1
arahy.Tifrunner.gnm1.ann1.0Z9JWZ Arachis hypogaea HOM05D004901 ORTHO05D005592 4.4e-74 282.7 233 63.1
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 5.8e-74 282.3 241 63.1
Lsat_1_v5_gn_8_141780 Lactuca sativa HOM05D004901 ORTHO05D005592 2.9e-73 280.0 230 63.5
Aqoxy4G02416 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 3.7e-73 279.6 253 60.9
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 4.9e-73 279.3 244 61.5
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 6.4e-73 278.9 244 61.5
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 6.4e-73 278.9 238 63.0
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 6.4e-73 278.9 240 61.7
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 8.3e-73 278.5 251 61.8
BcaC05g27729 Brassica carinata HOM05D004901 ORTHO05D005592 1.1e-72 278.1 240 61.2
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 1.1e-72 278.1 240 61.2
C05p37130 Brassica napus HOM05D004901 ORTHO05D005592 1.1e-72 278.1 240 61.2
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 1.1e-72 278.1 240 61.2
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 2.4e-72 276.9 253 61.3
BolC5t32466H Brassica oleracea HOM05D004901 ORTHO05D005592 3.2e-72 276.6 240 61.2
MBI17_g21472_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 4.1e-72 276.2 230 63.0
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 5.4e-72 275.8 266 57.1
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 9.2e-72 275.0 291 52.9
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 1.6e-71 274.2 235 62.1
CARHR034280 Cardamine hirsuta HOM05D004901 ORTHO05D005592 2.7e-71 273.5 239 62.3
Aa31LG6G8790 Aethionema arabicum HOM05D004901 ORTHO05D005592 3.5e-71 273.1 245 59.2
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 4.6e-71 272.7 233 62.2
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 4.6e-71 272.7 230 62.6
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 7.8e-71 271.9 230 64.3
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 1.3e-70 271.2 239 61.1
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 3.0e-70 270.0 271 55.4
vmacro00754 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 3.0e-70 270.0 284 54.9
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 1.1e-69 268.1 231 61.9
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 1.5e-69 267.7 271 56.8
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 1.9e-69 267.3 285 52.3
SHI09022 Sapria himalayana HOM05D004901 ORTHO05D005592 3.3e-69 266.5 230 61.7
Mapoly0001s0472 Marchantia polymorpha HOM05D004901 ORTHO05D005592 9.5e-69 265.0 270 56.3
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 1.2e-68 264.6 237 60.8
CDE04G3479 Ceratophyllum demersum HOM05D004901 ORTHO05D005592 1.6e-68 264.2 257 57.6
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 2.1e-68 263.8 249 57.4
HanXRQChr17g0559191 Helianthus annuus HOM05D004901 ORTHO05D005592 2.8e-68 263.5 244 61.1
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 4.0e-67 259.6 261 56.7
Nitab4.5_0003010g0060 Nicotiana tabacum HOM05D004901 ORTHO05D005592 6.8e-67 258.8 241 61.4
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 1.5e-66 257.7 253 59.7
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 4.4e-66 256.1 216 61.1
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 1.3e-65 254.6 253 59.3
Peaxi162Scf00391g00531 Petunia axillaris HOM05D004901 ORTHO05D005592 6.4e-65 252.3 248 59.3
Solyc11g020760.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 1.4e-64 251.1 233 60.5
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 2.1e-63 247.3 255 55.3
ATR0749G100 Amborella trichopoda HOM05D004901 ORTHO05D005592 6.6e-62 242.3 259 53.3
Zm00001eb201140 Zea mays HOM05D004901 ORTHO05D005592 5.6e-61 239.2 255 51.4
BcaB03g13661 Brassica carinata HOM05D004901 ORTHO05D005592 3.6e-60 236.5 231 55.4
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 3.1e-59 233.4 201 63.2
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 1.3e-57 228.0 234 54.3
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 2.9e-57 226.9 230 56.1
Nitab4.5_0000167g0280 Nicotiana tabacum HOM05D004901 ORTHO05D005592 7.3e-53 212.2 234 54.3
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 2.8e-52 210.3 233 53.6
MSTRG.1544 Avicennia marina HOM05D004901 ORTHO05D005592 6.4e-49 199.1 175 61.7
Ca_19714_v3 Cicer arietinum L. HOM05D004901 ORTHO05D005592 1.8e-43 181.0 201 52.2
VMungo1127G1203 Vigna mungo HOM05D004901 ORTHO05D005592 9.0e-43 178.7 201 51.7
Atru.chr13.2409 Acer truncatum HOM05D004901 ORTHO05D005592 1.2e-34 151.8 91 85.7
Sc23g0001380 Simmondsia chinensis HOM05D004901 ORTHO05D005592 3.4e-34 150.2 91 82.4
RcHm_v2.0_Chr7g0228881 Rosa chinensis HOM05D004901 ORTHO05D005592 5.8e-34 149.4 91 84.6
HPP92_004437 Vanilla planifolia HOM05D004901 ORTHO05D005592 3.2e-32 143.7 95 76.8
Sc23g0001370 Simmondsia chinensis HOM05D004901 ORTHO05D005592 1.0e-30 138.7 128 54.7
ClCG11G008660 Citrullus lanatus HOM05D004901 ORTHO05D005592 1.9e-29 134.4 129 53.5
RcHm_v2.0_Chr7g0228871 Rosa chinensis HOM05D004901 ORTHO05D005592 4.3e-29 133.3 116 59.5
Lj7C288T6 Lonicera japonica HOM05D004901 ORTHO05D005592 5.6e-29 132.9 117 57.3
Atru.chr13.2408 Acer truncatum HOM05D004901 ORTHO05D005592 2.1e-28 131.0 129 53.5
HPP92_004438 Vanilla planifolia HOM05D004901 ORTHO05D005592 3.7e-28 130.2 137 50.4
Prupe.2G019600 Prunus persica HOM05D004901 ORTHO05D005592 2.2e-25 120.9 238 37.0
AUR62004624 Chenopodium quinoa HOM05D004901 ORTHO05D005592 4.9e-25 119.8 77 79.2
ClCG11G008680 Citrullus lanatus HOM05D004901 ORTHO05D005592 3.3e-21 107.1 95 63.2
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 1.6e-20 104.8 70 77.1
Dinv02586 Davidia involucrata HOM05D004901 ORTHO05D005592 2.1e-20 104.4 136 44.1
Haze_26138 Corylus avellana HOM05D004901 ORTHO05D005592 6.2e-20 102.8 159 37.7
FAN03G2849 Fragaria x ananassa HOM05D004901 ORTHO05D005592 6.2e-20 102.8 91 63.7
PRCOL_00002915 Prasinoderma coloniale HOM05D004901 ORTHO05D005592 1.4e-19 101.7 160 40.0
Cre03.g208833 Chlamydomonas reinhardtii HOM05D004901 ORTHO05D005592 2.2e-17 94.4 130 41.5
Cpa.g.sc66.23 Carica papaya HOM05D004901 ORTHO05D005592 5.0e-17 93.2 100 49.0
MCO11G659 Micromonas commoda HOM05D004901 ORTHO05D005592 8.2e-12 75.9 235 31.1
SEGI_36660 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 1.3e-09 68.6 104 32.7
SEGI_38234 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 1.7e-09 68.2 125 34.4
SEGI_15996 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 8.5e-09 65.9 64 42.2
SEGI_25517 Sequoiadendron giganteum HOM05D000764 ORTHO05D002819 1.1e-08 65.5 83 34.9
SEGI_40779 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 3.2e-08 63.9 85 35.3
SEGI_33819 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 5.5e-08 63.2 71 40.8
Pp3c26_370 Physcomitrium patens HOM05D000399 ORTHO05D000304 1.2e-07 62.0 85 40.0
SEGI_12086 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 2.1e-07 61.2 89 33.7
SEGI_28582 Sequoiadendron giganteum HOM05D000060 ORTHO05D000563 4.6e-07 60.1 73 37.0
Atru.chr7.559 Acer truncatum HOM05D000032 ORTHO05D004222 1.4e-06 58.5 76 39.5
Mapoly0003s0184 Marchantia polymorpha HOM05D000399 ORTHO05D000304 1.4e-06 58.5 66 48.5
SEGI_39015 Sequoiadendron giganteum HOM05D013116 ORTHO05D009660 1.8e-06 58.2 100 32.0
Cpa.g.sc8.303 Carica papaya HOM05D000032 ORTHO05D004222 2.3e-06 57.8 76 39.5
COL.COLO4_18728 Corchorus olitorius HOM05D000399 ORTHO05D000304 2.3e-06 57.8 83 43.4
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 2.3e-06 57.8 74 31.1
Aa31LG11G10060 Aethionema arabicum HOM05D000032 ORTHO05D004701 3.0e-06 57.4 76 39.5
arahy.Tifrunner.gnm1.ann1.BU69I6 Arachis hypogaea HOM05D000032 ORTHO05D004222 3.0e-06 57.4 76 40.8
arahy.Tifrunner.gnm1.ann1.L46XKT Arachis hypogaea HOM05D000032 ORTHO05D004222 3.0e-06 57.4 76 40.8
CANSAT11G2053 Cannabis sativa HOM05D000399 ORTHO05D000304 3.0e-06 57.4 92 41.3
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 3.0e-06 57.4 80 42.5
Dinv02587 Davidia involucrata HOM05D004901 ORTHO05D005592 3.9e-06 57.0 41 75.6
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 3.9e-06 57.0 64 48.4
PSO170G0680 Papaver somniferum HOM05D000032 ORTHO05D004222 3.9e-06 57.0 88 39.8
PSO210G3389 Papaver somniferum HOM05D000032 ORTHO05D004222 3.9e-06 57.0 88 39.8
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 3.9e-06 57.0 66 45.5
HPP92_012194 Vanilla planifolia HOM05D000032 ORTHO05D004222 3.9e-06 57.0 76 40.8
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 5.1e-06 56.6 68 44.1
Aqoxy6G02812 Aquilegia oxysepala HOM05D000032 ORTHO05D004222 5.1e-06 56.6 76 38.2
CANSAT54G2533 Cannabis sativa HOM05D000032 ORTHO05D004701 5.1e-06 56.6 78 38.5
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 5.1e-06 56.6 80 42.5
ECA234G3688 Erigeron canadensis HOM05D000032 ORTHO05D004222 5.1e-06 56.6 76 36.8
MD09G1134900 Malus domestica HOM05D000032 ORTHO05D004222 5.1e-06 56.6 76 36.8
Nn7g37702 Nelumbo nucifera HOM05D000032 ORTHO05D004222 5.1e-06 56.6 76 39.5
Pp3c2_2520 Physcomitrium patens HOM05D000032 ORTHO05D004701 5.1e-06 56.6 76 36.8
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 5.1e-06 56.6 92 40.2
SEGI_30636 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 5.1e-06 56.6 67 34.3
SEGI_32162 Sequoiadendron giganteum HOM05D009297 ORTHO05D009660 5.1e-06 56.6 157 27.4
Ah.03g147750 Amaranthus hybridus HOM05D000032 ORTHO05D004701 6.7e-06 56.2 76 38.2
Aqoxy5G01251 Aquilegia oxysepala HOM05D000032 ORTHO05D004222 6.7e-06 56.2 85 38.8
CARHR187000 Cardamine hirsuta HOM05D000032 ORTHO05D004701 6.7e-06 56.2 76 38.2
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 6.7e-06 56.2 144 35.4
DCAR_001171 Daucus carota HOM05D000399 ORTHO05D000304 6.7e-06 56.2 64 45.3
DCAR_006124 Daucus carota HOM05D000399 ORTHO05D000304 6.7e-06 56.2 64 45.3
DCAR_010108 Daucus carota HOM05D000399 ORTHO05D000304 6.7e-06 56.2 64 45.3
Thhalv10003698m.g Eutrema salsugineum HOM05D000032 ORTHO05D004701 6.7e-06 56.2 76 38.2
Lj5g0021362 Lotus japonicus HOM05D000032 ORTHO05D004701 6.7e-06 56.2 76 38.2
Psat0s2843g0040 Pisum sativum HOM05D000032 ORTHO05D004701 6.7e-06 56.2 157 31.8
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 6.7e-06 56.2 80 41.2
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 6.7e-06 56.2 80 42.5
THA.LOC104822276 Tarenaya hassleriana HOM05D000032 ORTHO05D004222 6.7e-06 56.2 76 38.2
TAR629G0560 Trochodendron aralioides HOM05D000032 ORTHO05D004222 6.7e-06 56.2 76 39.5
VMungo0647G1552 Vigna mungo HOM05D000032 ORTHO05D004222 6.7e-06 56.2 80 38.8
GSVIVG01000821001 Vitis vinifera HOM05D000032 ORTHO05D004222 6.7e-06 56.2 76 38.2
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 8.8e-06 55.8 66 45.5
AL6G38380 Arabidopsis lyrata HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 38.2
AT5G26742 Arabidopsis thaliana HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 38.2
arahy.Tifrunner.gnm1.ann1.1W5AMY Arachis hypogaea HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 38.2
arahy.Tifrunner.gnm1.ann1.RIK2ZP Arachis hypogaea HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 38.2
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 8.8e-06 55.8 68 42.6
CANSAT54G1128 Cannabis sativa HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 38.2
CDE12G0957 Ceratophyllum demersum HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 36.8
DCAR_013331 Daucus carota HOM05D000032 ORTHO05D004222 8.8e-06 55.8 76 38.2
Duzib177G0962 Durio zibethinus HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 39.5
Lsat_1_v5_gn_9_84140 Lactuca sativa HOM05D000032 ORTHO05D004701 8.8e-06 55.8 76 38.2
Lalb_Chr17g0348061 Lupinus albus HOM05D000032 ORTHO05D004222 8.8e-06 55.8 76 39.5
MD17G1123900 Malus domestica HOM05D000032 ORTHO05D004222 8.8e-06 55.8 76 36.8
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 8.8e-06 55.8 71 40.8
SEGI_20878 Sequoiadendron giganteum HOM05D001711 ORTHO05D002211 8.8e-06 55.8 128 28.1
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.8e-06 55.8 74 43.2
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 8.8e-06 55.8 74 43.2
TWI74G1516 Tripterygium wilfordii HOM05D000032 ORTHO05D004222 8.8e-06 55.8 76 38.2
HPP92_001878 Vanilla planifolia HOM05D000032 ORTHO05D004222 8.8e-06 55.8 76 38.2
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 8.8e-06 55.8 76 38.2


User provided reference genes

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