Gene: CANSAT11G2053
General Information
Structural Information
- Species Cannabis sativa
- Gene Identifier CANSAT11G2053
- Transcript Identifier CANSAT11G2053.01
- Gene Type Coding gene
- Location NC_044377.1 : 22306520-22322533 : negative
Gene Family Information
- ID HOM05D000399
- #Genes/#Species 1254/98
- Phylogenetic origin
- ID ORTHO05D000304
- #Genes/#Species 1156/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna-XM_030654483.1
- pid XP_030510343.1
- id gene-LOC115725068
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009944 | ISO | PLAZA Integrative Orthology | polarity specification of adaxial/abaxial axis | Os04g0509300 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT5G20320 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT3G43920 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT5G20320 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT5G20320 |
| GO:0010599 | ISO | PLAZA Integrative Orthology | production of lsiRNA involved in RNA interference | AT5G20320 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | Solyc08g067210.3 |
| GO:0009616 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immune response | AT5G20320 |
| GO:0051214 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immunity against RNA virus | AT5G20320 |
| GO:0006353 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, termination | AT5G20320 |
| GO:0010050 | ISO | PLAZA Integrative Orthology | vegetative phase change | AT5G20320 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT5G20320 |
| GO:0048608 | ISO | PLAZA Integrative Orthology | reproductive structure development | Os04g0509300 |
| GO:0010492 | ISO | PLAZA Integrative Orthology | maintenance of shoot apical meristem identity | Os04g0509300 |
| GO:0006396 | IEA | InterPro | RNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | AT3G43920 |
| GO:0004525 | IEA | InterPro | ribonuclease III activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G20320 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G43920 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR003100 | PAZ domain |
| IPR014720 | Double-stranded RNA-binding domain |
| IPR000999 | Ribonuclease III domain |
| IPR038248 | Dicer dimerisation domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| Mapman id | Description |
|---|---|
| 16.9.1.3 | RNA processing.mRNA silencing.transacting siRNA pathway.endoribonuclease (DCL4) |
| 16.9.1.4.2 | RNA processing.mRNA silencing.transacting siRNA pathway.DRB4-DRB7.1 dsRNA-binding regulator complex.component DRB7 |