Gene: AT5G26742
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G26742
- Transcript Identifier AT5G26742.2
- Gene Type Coding gene
- Location Chr5 : 9285540-9288871 : negative
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004701
- #Genes/#Species 173/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G26742.2
- symbol emb1138
- Alias AtRH3,RH3
- full_name embryo defective 1138
- uniprot Q8L7S8
Descriptions
- Description DEAD box RNA helicase (RH3)
- Computational description embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast stroma, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1); Has 62677 Blast hits to 60420 proteins in 3357 species: Archae - 1370; Bacteria - 33239; Metazoa - 8033; Fungi - 5520; Plants - 3292; Viruses - 108; Other Eukaryotes - 11115 (source: NCBI BLink).
- Computational description embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1); Has 62370 Blast hits to 60300 proteins in 3359 species: Archae - 1368; Bacteria - 33087; Metazoa - 7991; Fungi - 5480; Plants - 3250; Viruses - 141; Other Eukaryotes - 11053 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042254 | IEA | GOA Database | ribosome biogenesis | |
| GO:0042254 | IMP | Gene Ontology | ribosome biogenesis | 1 |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc08g042050.3 |
| GO:0009658 | IMP | Gene Ontology | chloroplast organization | 1 |
| GO:0009793 | NAS | Gene Ontology | embryo development ending in seed dormancy | |
| GO:0000373 | IMP IBA | Gene Ontology | Group II intron splicing | 1 2 |
| GO:0009651 | IMP | Gene Ontology | response to salt stress | 1 |
| GO:0006364 | IBA | Gene Ontology | rRNA processing | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IEA | Gene Ontology | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0008270 | IEA | Gene Ontology | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003724 | IEA | Gene Ontology | RNA helicase activity | |
| GO:0003729 | IDA, HDA | Gene Ontology | mRNA binding | 3 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IDA IEA | GOA Database | chloroplast | |
| GO:0009507 | HDA | Gene Ontology | chloroplast | 5 |
| GO:0009570 | IEA | GOA Database | chloroplast stroma | |
| GO:0009570 | IDA, HDA | Gene Ontology | chloroplast stroma | 6 7 |
| GO:0009941 | IDA | GOA Database | chloroplast envelope | |
| GO:0009941 | HDA | Gene Ontology | chloroplast envelope | 8 |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009536 | HDA | Gene Ontology | plastid | 9 |
| GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 2 |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012562 | GUCT |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR001650 | Helicase, C-terminal |
| IPR001878 | Zinc finger, CCHC-type |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| Mapman id | Description |
|---|---|
| 16.11.4.1.1.5 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.basal splicing factor (RH3) |