Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_09540 Sequoiadendron giganteum HOM05D000228 ORTHO05D036620 4.0e-125 451.4 226 100.0
SEGI_24851 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 3.4e-36 156.0 80 96.2
Lj4C801G10 Lonicera japonica HOM05D000228 ORTHO05D001545 3.6e-33 146.0 80 85.0
Dinv31892 Davidia involucrata HOM05D000228 ORTHO05D001545 4.7e-33 145.6 80 85.0
TAR376G0725 Trochodendron aralioides HOM05D000228 ORTHO05D001545 4.7e-33 145.6 80 85.0
TAR628G0489 Trochodendron aralioides HOM05D000228 ORTHO05D001545 4.7e-33 145.6 80 85.0
Cfa007031 Carpinus fangiana HOM05D000228 ORTHO05D001545 6.1e-33 145.2 80 82.5
Haze_03702 Corylus avellana HOM05D000228 ORTHO05D001545 6.1e-33 145.2 80 82.5
CiPaw.07G063400 Carya illinoinensis HOM05D000228 ORTHO05D001545 7.9e-33 144.8 80 82.5
Atru.chr3.911 Acer truncatum HOM05D000228 ORTHO05D001545 1.0e-32 144.4 85 77.6
Dinv39555 Davidia involucrata HOM05D000228 ORTHO05D001545 1.4e-32 144.1 80 83.8
RhsimUnG0152400 Rhododendron simsii HOM05D000228 ORTHO05D001545 2.3e-32 143.3 146 54.1
vmacro04378 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 2.3e-32 143.3 80 85.0
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 3.0e-32 142.9 80 82.5
Aqoxy5G01098 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 3.0e-32 142.9 80 82.5
CSS0032530 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 3.0e-32 142.9 80 82.5
MBI11_g09467_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D001545 3.0e-32 142.9 80 82.5
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 3.9e-32 142.5 80 82.5
ECA247G3915 Erigeron canadensis HOM05D000228 ORTHO05D001545 3.9e-32 142.5 80 83.8
HanXRQChr04g0107401 Helianthus annuus HOM05D000228 ORTHO05D001545 3.9e-32 142.5 80 83.8
FAN26G0663 Fragaria x ananassa HOM05D000228 ORTHO05D001545 5.1e-32 142.1 86 77.9
MD15G1237200 Malus domestica HOM05D000228 ORTHO05D001545 5.1e-32 142.1 80 85.0
Prupe.7G175200 Prunus persica HOM05D000228 ORTHO05D001545 5.1e-32 142.1 80 85.0
Rhsim10G0205500 Rhododendron simsii HOM05D000228 ORTHO05D001545 5.1e-32 142.1 146 54.1
Zm00001eb416050 Zea mays HOM05D000228 ORTHO05D001545 5.1e-32 142.1 80 85.0
Hma1.2p1_1598F.1_g292950 Hydrangea macrophylla HOM05D000228 ORTHO05D001545 6.7e-32 141.7 80 81.2
Nn6g31908 Nelumbo nucifera HOM05D000228 ORTHO05D001545 6.7e-32 141.7 80 81.2
ATR0661G313 Amborella trichopoda HOM05D000228 ORTHO05D001545 8.8e-32 141.4 80 83.8
CSS0034780 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 1.1e-31 141.0 80 82.5
CSS0036491 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 1.1e-31 141.0 80 82.5
CDE02G1347 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 1.1e-31 141.0 80 82.5
CDE04G2464 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 1.1e-31 141.0 80 82.5
Hund16621 Selenicereus undatus HOM05D000228 ORTHO05D001545 1.1e-31 141.0 80 80.0
Ciclev10024686m.g Citrus clementina HOM05D000228 ORTHO05D001545 1.5e-31 140.6 85 74.1
Os05g0151000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 2.0e-31 140.2 80 83.8
QL06p052095 Quercus lobata HOM05D000228 ORTHO05D001545 2.0e-31 140.2 80 80.0
MD02G1123400 Malus domestica HOM05D000228 ORTHO05D001545 2.6e-31 139.8 80 83.8
FAN19G0156 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 82.5
FAN23G1904 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 82.5
FAN26G3056 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 82.5
FAN28G2440 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 82.5
Lsat_1_v5_gn_1_12220 Lactuca sativa HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 81.2
PSO675G5068 Papaver somniferum HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 81.2
RcHm_v2.0_Chr2g0098321 Rosa chinensis HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 82.5
vmacro20497 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 4.4e-31 139.0 145 50.3
HPP92_014402 Vanilla planifolia HOM05D000228 ORTHO05D001545 4.4e-31 139.0 80 81.2
Eucgr.I02304 Eucalyptus grandis HOM05D000228 ORTHO05D001545 5.7e-31 138.7 117 60.7
FvH4_1g11070 Fragaria vesca HOM05D000228 ORTHO05D001545 5.7e-31 138.7 80 82.5
FAN23G0813 Fragaria x ananassa HOM05D000228 ORTHO05D001545 5.7e-31 138.7 80 82.5
FAN19G0561 Fragaria x ananassa HOM05D000228 ORTHO05D001545 7.4e-31 138.3 80 82.5
Dinv40146 Davidia involucrata HOM05D000228 ORTHO05D001545 1.3e-30 137.5 80 77.5
PSO541G3277 Papaver somniferum HOM05D000228 ORTHO05D001545 1.3e-30 137.5 80 80.0
Potri.005G107600 Populus trichocarpa HOM05D000228 ORTHO05D001545 2.2e-30 136.7 87 74.7
TWI09G0739 Tripterygium wilfordii HOM05D000228 ORTHO05D001545 2.2e-30 136.7 120 57.5
PGR119G0284 Punica granatum HOM05D000228 ORTHO05D001545 2.8e-30 136.3 80 78.8
FAN28G1830 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.8e-30 135.6 80 80.0
ClCG10G000460 Citrullus lanatus HOM05D000228 ORTHO05D001545 6.3e-30 135.2 80 81.2
MELO3C013741.2 Cucumis melo HOM05D000228 ORTHO05D001545 6.3e-30 135.2 80 81.2
CsaV3_3G000490 Cucumis sativus L. HOM05D000228 ORTHO05D001545 6.3e-30 135.2 80 81.2
Manes.01G151000 Manihot esculenta HOM05D000228 ORTHO05D001545 6.3e-30 135.2 85 71.8
Ah.03g134280 Amaranthus hybridus HOM05D000228 ORTHO05D001545 8.2e-30 134.8 80 77.5
AUR62026224 Chenopodium quinoa HOM05D000228 ORTHO05D001545 8.2e-30 134.8 80 77.5
AUR62026407 Chenopodium quinoa HOM05D000228 ORTHO05D001545 8.2e-30 134.8 80 77.5
Eucgr.F01570 Eucalyptus grandis HOM05D000228 ORTHO05D001545 8.2e-30 134.8 112 58.9
Sc03g0003780 Simmondsia chinensis HOM05D000228 ORTHO05D001545 8.2e-30 134.8 80 82.5
RcHm_v2.0_Chr2g0098331 Rosa chinensis HOM05D000228 ORTHO05D001545 2.4e-29 133.3 80 78.8
Actinidia17401 Actinidia chinensis HOM05D000228 ORTHO05D001545 4.1e-29 132.5 112 58.9
Actinidia37953 Actinidia chinensis HOM05D000228 ORTHO05D001545 4.1e-29 132.5 75 81.3
ECA233G0514 Erigeron canadensis HOM05D000228 ORTHO05D001545 4.1e-29 132.5 80 76.2
ECA233G2080 Erigeron canadensis HOM05D000228 ORTHO05D001545 4.1e-29 132.5 80 77.5
Sabra05G0088100 Salix brachista HOM05D000228 ORTHO05D001545 4.1e-29 132.5 87 72.4
Glyma.01G162200 Glycine max HOM05D000228 ORTHO05D001545 7.0e-29 131.7 80 78.8
Sed0006002 Sechium edule HOM05D000228 ORTHO05D001545 7.0e-29 131.7 80 80.0
A01p02890 Brassica napus HOM05D000228 ORTHO05D001545 1.2e-28 131.0 85 70.6
CAN.G890.26 Capsicum annuum HOM05D000228 ORTHO05D001545 1.2e-28 131.0 80 77.5
Ca_24944_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 1.2e-28 131.0 80 78.8
Thhalv10024193m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 1.2e-28 131.0 85 70.6
Glyma.11G081200 Glycine max HOM05D000228 ORTHO05D001545 1.2e-28 131.0 80 78.8
Sp7g33590 Schrenkiella parvula HOM05D000228 ORTHO05D001545 1.2e-28 131.0 85 70.6
Sopen02g028130 Solanum pennellii HOM05D000228 ORTHO05D001545 1.2e-28 131.0 80 77.5
PGSC0003DMG400003590 Solanum tuberosum HOM05D000228 ORTHO05D001545 1.2e-28 131.0 80 77.5
VMungo1215G1821 Vigna mungo HOM05D000228 ORTHO05D001545 1.2e-28 131.0 80 80.0
Aa31LG6G12760 Aethionema arabicum HOM05D000228 ORTHO05D001545 1.6e-28 130.6 85 70.6
Carub.0007s0443 Capsella rubella HOM05D000228 ORTHO05D001545 1.6e-28 130.6 85 70.6
CARHR244170 Cardamine hirsuta HOM05D000228 ORTHO05D001545 1.6e-28 130.6 85 70.6
THA.LOC104804281 Tarenaya hassleriana HOM05D000228 ORTHO05D001545 1.6e-28 130.6 85 70.6
EL10Ac6g13333 Beta vulgaris HOM05D000228 ORTHO05D001545 2.0e-28 130.2 80 73.8
SGA_v2.0_scaffold116G32283 Striga asiatica HOM05D000228 ORTHO05D001545 2.0e-28 130.2 80 76.2
Phvul.002G104500 Phaseolus vulgaris HOM05D000228 ORTHO05D001545 2.6e-28 129.8 80 77.5
Psat2g151880 Pisum sativum HOM05D000228 ORTHO05D001545 2.6e-28 129.8 80 77.5
SGA_v2.0_scaffold127G34014 Striga asiatica HOM05D000228 ORTHO05D001545 2.6e-28 129.8 80 75.0
COL.COLO4_22497 Corchorus olitorius HOM05D000228 ORTHO05D001545 4.5e-28 129.0 85 68.2
Duzib187G1668 Durio zibethinus HOM05D000228 ORTHO05D001545 4.5e-28 129.0 85 68.2
ECA233G5495 Erigeron canadensis HOM05D000228 ORTHO05D001545 4.5e-28 129.0 80 75.0
Lalb_Chr17g0338771 Lupinus albus HOM05D000228 ORTHO05D001545 4.5e-28 129.0 80 77.5
AL7G15270 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 5.9e-28 128.6 85 69.4
AT4G35800 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 5.9e-28 128.6 85 69.4
Lj2g0016023 Lotus japonicus HOM05D000228 ORTHO05D001545 5.9e-28 128.6 80 78.8
Lalb_Chr09g0321431 Lupinus albus HOM05D000228 ORTHO05D001545 5.9e-28 128.6 80 77.5
MD02G1123200 Malus domestica HOM05D000228 ORTHO05D001545 5.9e-28 128.6 80 77.5
BcaNung00792 Brassica carinata HOM05D000228 ORTHO05D001545 7.7e-28 128.3 85 68.2
C01p03210 Brassica napus HOM05D000228 ORTHO05D001545 7.7e-28 128.3 85 68.2
BraA01t00274Z Brassica rapa HOM05D000315 ORTHO05D001545 7.7e-28 128.3 85 69.4
Glyma.09G278900 Glycine max HOM05D000228 ORTHO05D001545 7.7e-28 128.3 80 78.8
Thecc.01G011300 Theobroma cacao HOM05D000228 ORTHO05D001545 7.7e-28 128.3 85 67.1
TPR.G25137 Trifolium pratense HOM05D000228 ORTHO05D001545 7.7e-28 128.3 80 76.2
BcaC01g00521 Brassica carinata HOM05D000315 ORTHO05D001545 1.0e-27 127.9 85 69.4
BcaC01g00522 Brassica carinata HOM05D000228 ORTHO05D001545 1.0e-27 127.9 85 69.4
A08p21640 Brassica napus HOM05D000228 ORTHO05D001545 1.0e-27 127.9 85 69.4
C03p80930 Brassica napus HOM05D000228 ORTHO05D001545 1.0e-27 127.9 85 69.4
BolC3t20350H Brassica oleracea HOM05D000228 ORTHO05D001545 1.0e-27 127.9 85 69.4
BraA08t34114Z Brassica rapa HOM05D000228 ORTHO05D001545 1.0e-27 127.9 85 69.4
Oeu012551.1 Olea europaea HOM05D000228 ORTHO05D001545 1.0e-27 127.9 80 75.0
Peaxi162Scf00328g00128 Petunia axillaris HOM05D000228 ORTHO05D001545 1.0e-27 127.9 80 75.0
Lalb_Chr16g0377371 Lupinus albus HOM05D000228 ORTHO05D001545 1.3e-27 127.5 80 76.2
SEGI_13624 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 1.3e-27 127.5 80 75.0
Ah.02g129100 Amaranthus hybridus HOM05D000228 ORTHO05D001545 2.2e-27 126.7 86 66.3
Migut.N01734 Erythranthe guttata HOM05D000228 ORTHO05D001545 2.2e-27 126.7 80 75.0
Gohir.A11G171700 Gossypium hirsutum HOM05D000228 ORTHO05D001545 2.2e-27 126.7 85 67.1
Gorai.007G190500 Gossypium raimondii HOM05D000228 ORTHO05D001545 2.2e-27 126.7 85 67.1
Medtr5g023020 Medicago truncatula HOM05D000228 ORTHO05D001545 2.2e-27 126.7 80 76.2
SMO203G0153 Selaginella moellendorffii HOM05D000228 ORTHO05D001545 2.2e-27 126.7 80 76.2
unitig_0.g552 Utricularia gibba HOM05D000228 ORTHO05D001545 2.2e-27 126.7 80 73.8
Cc07_g11340 Coffea canephora HOM05D000228 ORTHO05D001545 2.9e-27 126.3 80 75.0
Cc08_g04850 Coffea canephora HOM05D000228 ORTHO05D001545 2.9e-27 126.3 80 75.0
Gohir.A02G174500 Gossypium hirsutum HOM05D000228 ORTHO05D001545 5.0e-27 125.6 85 67.1
Gohir.D03G005300 Gossypium hirsutum HOM05D000228 ORTHO05D001545 5.0e-27 125.6 85 67.1
Gorai.003G005700 Gossypium raimondii HOM05D000228 ORTHO05D001545 5.0e-27 125.6 85 67.1
BcaNung04874 Brassica carinata HOM05D000228 ORTHO05D001545 6.5e-27 125.2 85 67.1
Gohir.D11G178600 Gossypium hirsutum HOM05D000228 ORTHO05D001545 6.5e-27 125.2 85 65.9
Mapoly0070s0048 Marchantia polymorpha HOM05D000228 ORTHO05D001545 8.5e-27 124.8 80 75.0
Pp3c1_32300 Physcomitrium patens HOM05D000228 ORTHO05D001545 1.1e-26 124.4 80 72.5
arahy.Tifrunner.gnm1.ann1.FVA0CM Arachis hypogaea HOM05D000228 ORTHO05D001545 3.2e-26 122.9 80 73.8
arahy.Tifrunner.gnm1.ann1.XNR9AR Arachis hypogaea HOM05D000228 ORTHO05D001545 3.2e-26 122.9 80 73.8
Pp3c14_14540 Physcomitrium patens HOM05D000228 ORTHO05D001545 1.2e-25 120.9 80 68.8
Aqoxy5G00747 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 3.6e-25 119.4 145 44.8
BcaC07g38102 Brassica carinata HOM05D000228 ORTHO05D001545 1.0e-24 117.9 82 67.1
SGA_v2.0_scaffold15G07314 Striga asiatica HOM05D000228 ORTHO05D001545 5.2e-24 115.5 80 67.5
CAN.G843.58 Capsicum annuum HOM05D000228 ORTHO05D001545 5.7e-23 112.1 87 62.1
CAN.G348.5 Capsicum annuum HOM05D000228 ORTHO05D001545 9.7e-23 111.3 78 66.7
arahy.Tifrunner.gnm1.ann1.9K73PE Arachis hypogaea HOM05D000228 ORTHO05D001545 2.2e-22 110.2 84 67.9
arahy.Tifrunner.gnm1.ann1.FL0A4X Arachis hypogaea HOM05D000228 ORTHO05D001545 2.2e-22 110.2 84 67.9
Lj4C226G8 Lonicera japonica HOM05D000228 ORTHO05D001545 3.7e-22 109.4 112 51.8
arahy.Tifrunner.gnm1.ann1.BXI6FM Arachis hypogaea HOM05D000228 ORTHO05D001545 4.8e-22 109.0 84 66.7
arahy.Tifrunner.gnm1.ann1.J6X5FL Arachis hypogaea HOM05D000228 ORTHO05D001545 4.8e-22 109.0 84 66.7
arahy.Tifrunner.gnm1.ann1.248CB6 Arachis hypogaea HOM05D000228 ORTHO05D001545 2.9e-19 99.8 80 66.2
arahy.Tifrunner.gnm1.ann1.32E6CA Arachis hypogaea HOM05D000228 ORTHO05D001545 2.9e-19 99.8 80 66.2
Oeu039718.1 Olea europaea HOM05D000228 ORTHO05D001545 1.8e-16 90.5 58 69.0
CBR_g42147 Chara braunii HOM05D000228 ORTHO05D001545 4.0e-16 89.4 121 41.3
MD02G1125700 Malus domestica HOM05D000228 ORTHO05D036620 1.2e-12 77.8 47 76.6
SEGI_22703 Sequoiadendron giganteum HOM05D001331 ORTHO05D001157 1.0e-11 74.7 45 80.0
PRCOL_00006783 Prasinoderma coloniale HOM05D000228 ORTHO05D001545 5.5e-10 68.9 91 40.7
CAN.G28.18 Capsicum annuum HOM05D003093 ORTHO05D004301 1.5e-07 60.8 47 63.8
Cre16.g680900 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D001545 1.7e-06 57.4 82 36.6
MCO15G374 Micromonas commoda HOM05D000228 ORTHO05D001545 2.8e-06 56.6 91 33.0


User provided reference genes

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