Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.3e-85 319.7 167 100.0
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 7.2e-15 84.7 50 80.0
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 7.2e-15 84.7 50 80.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 9.4e-15 84.3 50 78.0
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.4e-15 84.3 50 82.0
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.1e-14 83.2 50 80.0
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.7e-14 82.0 50 78.0
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.7e-14 82.0 50 78.0
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.7e-14 82.0 50 78.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 76.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 76.0
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 76.0
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 6.1e-14 81.6 50 78.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 8.0e-14 81.3 51 78.4
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 8.0e-14 81.3 50 78.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 8.0e-14 81.3 50 78.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 8.0e-14 81.3 50 78.0
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 8.0e-14 81.3 50 74.0
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 8.0e-14 81.3 50 74.0
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 8.0e-14 81.3 50 78.0
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 80.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 80.0
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 80.0
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 80.0
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 80.0
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 80.0
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.0e-13 80.9 50 80.0
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 78.0
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.0e-13 80.9 52 71.2
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.0e-13 80.9 50 80.0
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 82.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.4e-13 80.5 49 77.6
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.4e-13 80.5 52 71.2
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 76.0
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 76.0
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.4e-13 80.5 50 78.0
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 76.0
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.8e-13 80.1 51 78.4
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 80.0
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 80.0
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 80.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 76.0
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 76.0
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 80.0
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 78.0
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.8e-13 80.1 50 80.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.3e-13 79.7 50 78.0
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.3e-13 79.7 50 76.0
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.3e-13 79.7 50 80.0
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.3e-13 79.7 50 76.0
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.3e-13 79.7 50 76.0
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.3e-13 79.7 50 76.0
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 2.3e-13 79.7 50 74.0
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.0e-13 79.3 51 78.4
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.0e-13 79.3 46 80.4
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.0e-13 79.3 50 80.0
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.0e-13 79.3 50 80.0
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.0e-13 79.3 50 80.0
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.0e-13 79.0 55 74.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.0e-13 79.0 55 74.5
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 4.0e-13 79.0 50 74.0
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 4.0e-13 79.0 52 69.2
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 4.0e-13 79.0 52 69.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 5.2e-13 78.6 50 78.0
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.2e-13 78.6 52 76.9
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.7e-13 78.2 46 80.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 6.7e-13 78.2 50 76.0
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 6.7e-13 78.2 50 76.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.8e-13 77.8 50 76.0
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 8.8e-13 77.8 50 76.0
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.2e-12 77.4 50 78.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.2e-12 77.4 45 80.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.2e-12 77.4 45 80.0
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.5e-12 77.0 50 76.0
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.5e-12 77.0 52 71.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.5e-12 77.0 51 76.5
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.5e-12 77.0 49 75.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.5e-12 77.0 50 74.0
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.5e-12 77.0 50 74.0
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 2.0e-12 76.6 52 75.0
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.0e-12 76.6 51 76.5
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.0e-12 76.6 52 75.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.0e-12 76.6 51 76.5
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 2.0e-12 76.6 42 83.3
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.0e-12 76.6 50 74.0
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 2.0e-12 76.6 52 75.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.0e-12 76.6 45 80.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.6e-12 76.3 49 75.5
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.6e-12 76.3 45 80.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 2.6e-12 76.3 45 80.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.6e-12 76.3 52 67.3
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.6e-12 76.3 45 80.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.3e-12 75.9 42 83.3
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.3e-12 75.9 42 83.3
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.3e-12 75.9 42 83.3
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 3.3e-12 75.9 42 83.3
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 3.3e-12 75.9 42 83.3
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.3e-12 75.9 55 70.9
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 4.4e-12 75.5 49 75.5
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 4.4e-12 75.5 50 70.0
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.4e-12 75.5 45 77.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 4.4e-12 75.5 52 67.3
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 5.7e-12 75.1 51 74.5
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 5.7e-12 75.1 51 74.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 7.5e-12 74.7 50 76.0
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 7.5e-12 74.7 50 76.0
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.3e-11 73.9 50 72.0
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.7e-11 73.6 48 72.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.2e-11 73.2 95 42.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.8e-11 72.8 55 65.5
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.4e-10 70.5 49 69.4
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 2.4e-10 69.7 52 65.4
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-10 69.3 40 77.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-10 69.3 40 77.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-10 69.3 40 77.5
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 5.3e-10 68.6 50 68.0
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 5.3e-10 68.6 108 41.7
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.1e-10 67.8 40 75.0
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 9.1e-10 67.8 52 61.5
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 3.5e-09 65.9 40 75.0
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.5e-09 65.9 45 64.4
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.0e-08 64.3 34 88.2
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 3.8e-08 62.4 37 78.4
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 2.7e-06 56.2 35 74.3
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 6.1e-06 55.1 35 71.4


User provided reference genes

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