Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03649 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.8e-78 295.8 145 100.0
SEGI_06206 Sequoiadendron giganteum HOM05D000058 ORTHO05D002699 3.4e-13 79.0 44 72.7
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 4.5e-13 78.6 40 95.0
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.0e-12 77.4 50 76.0
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.3e-12 77.0 40 92.5
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.3e-12 77.0 40 92.5
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.3e-12 77.0 40 92.5
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.3e-12 77.0 40 92.5
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.3e-12 77.0 56 71.4
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-12 76.3 74 59.5
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-12 76.3 74 59.5
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-12 76.3 74 59.5
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-12 76.3 74 59.5
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.9e-12 75.9 74 58.1
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.9e-12 75.9 73 60.3
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.9e-12 75.9 73 60.3
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.9e-12 75.9 73 60.3
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 5.0e-12 75.1 40 85.0
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 6.5e-12 74.7 41 82.9
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 6.5e-12 74.7 40 90.0
SEGI_23567 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 6.5e-12 74.7 39 92.3
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 8.5e-12 74.3 46 80.4
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 8.5e-12 74.3 56 66.1
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.1e-11 73.9 40 85.0
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.1e-11 73.9 40 85.0
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
SEGI_31438 Sequoiadendron giganteum HOM05D003583 ORTHO05D004169 1.1e-11 73.9 44 68.2
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.1e-11 73.9 40 85.0
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.4e-11 73.6 76 53.9
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.4e-11 73.6 56 64.3
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.4e-11 73.6 40 82.5
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 1.9e-11 73.2 40 82.5
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.9e-11 73.2 40 82.5
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.5e-11 72.8 40 82.5
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.5e-11 72.8 40 82.5
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-11 72.8 40 85.0
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 2.5e-11 72.8 40 85.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 2.5e-11 72.8 40 85.0
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 2.5e-11 72.8 40 85.0
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 2.5e-11 72.8 40 82.5
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 2.5e-11 72.8 40 82.5
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 3.2e-11 72.4 40 82.5
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 3.2e-11 72.4 40 82.5
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 5.5e-11 71.6 40 80.0
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 5.5e-11 71.6 40 82.5
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 5.5e-11 71.6 40 82.5
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 5.5e-11 71.6 39 84.6
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 7.2e-11 71.2 37 89.2
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 7.2e-11 71.2 56 69.6
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 9.4e-11 70.9 40 80.0
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 9.4e-11 70.9 40 80.0
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 9.4e-11 70.9 40 80.0
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 9.4e-11 70.9 40 80.0
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 9.4e-11 70.9 40 82.5
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.2e-10 70.5 87 48.3
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.2e-10 70.5 40 82.5
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 1.2e-10 70.5 40 80.0
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-10 70.1 70 54.3
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-10 70.1 70 54.3
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.6e-10 70.1 70 54.3
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.6e-10 70.1 39 87.2
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 2.1e-10 69.7 69 55.1
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 2.1e-10 69.7 56 64.3
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-10 69.7 39 82.1
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 3.6e-10 68.9 37 86.5
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.6e-10 68.6 39 79.5
SEGI_05060 Sequoiadendron giganteum HOM05D003303 ORTHO05D003887 4.6e-10 68.6 45 71.1
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 6.1e-10 68.2 40 80.0
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 6.1e-10 68.2 41 78.0
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.0e-09 67.4 54 63.0
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.4e-09 67.0 68 54.4
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.8e-09 66.6 37 81.1
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 1.8e-09 66.6 53 64.2
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 2.3e-09 66.2 40 77.5
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.0e-09 65.9 37 81.1
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 3.0e-09 65.9 39 82.1
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 5.1e-09 65.1 40 75.0
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 2.5e-08 62.8 35 82.9
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 3.3e-08 62.4 35 82.9
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 3.3e-08 62.4 35 82.9
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 3.3e-08 62.4 35 82.9
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 3.3e-08 62.4 35 82.9
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 5.7e-08 61.6 34 82.4
CARHR056710 Cardamine hirsuta HOM05D000216 ORTHO05D000634 2.2e-07 59.7 37 73.0
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.8e-07 59.3 34 79.4
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 2.8e-07 59.3 34 79.4
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 4.8e-07 58.5 35 77.1
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 6.3e-07 58.2 35 77.1
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 8.2e-07 57.8 35 77.1
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 8.2e-07 57.8 30 86.7
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 1.4e-06 57.0 31 83.9
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-06 56.6 35 80.0
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.4e-06 56.2 35 74.3
SEGI_29474 Sequoiadendron giganteum HOM05D001215 ORTHO05D001387 5.3e-06 55.1 44 56.8


User provided reference genes

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