Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 1.4e-214 749.6 434 100.0
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.9e-152 543.1 382 75.9
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 5.4e-139 498.4 370 72.7
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 3.2e-131 472.6 362 67.7
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 7.9e-130 468.0 338 69.2
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 2.5e-128 463.0 341 67.7
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 4.3e-128 462.2 384 63.0
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 4.3e-128 462.2 341 71.6
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 4.8e-127 458.8 380 61.8
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 6.2e-127 458.4 340 70.3
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.4e-126 457.2 343 68.8
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.8e-126 456.8 334 70.7
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 2.4e-126 456.4 339 67.8
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 5.3e-126 455.3 344 66.3
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 9.0e-126 454.5 340 68.8
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 9.0e-126 454.5 397 64.7
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 3.4e-125 452.6 341 69.2
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 5.8e-125 451.8 402 58.7
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 1.3e-124 450.7 334 69.5
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 1.7e-124 450.3 340 68.2
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 6.4e-124 448.4 295 75.6
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 2.5e-123 446.4 375 64.3
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 3.2e-123 446.0 334 68.6
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 2.1e-122 443.4 343 67.1
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 3.5e-122 442.6 332 68.1
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 6.0e-122 441.8 366 63.7
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.8e-121 440.3 332 66.3
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 5.1e-121 438.7 340 66.5
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 6.7e-121 438.3 334 68.3
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 1.5e-120 437.2 341 66.9
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.5e-120 437.2 341 66.3
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 1.5e-120 437.2 341 66.6
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 2.5e-120 436.4 340 66.2
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 4.3e-120 435.6 344 66.3
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 7.4e-120 434.9 341 68.0
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 9.6e-120 434.5 397 58.9
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 1.3e-119 434.1 333 67.0
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 2.1e-119 433.3 365 61.6
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 2.8e-119 433.0 359 63.8
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.8e-119 433.0 359 63.8
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 3.7e-119 432.6 339 67.3
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 3.7e-119 432.6 344 65.7
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 4.8e-119 432.2 370 59.7
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 6.2e-119 431.8 372 65.9
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 6.2e-119 431.8 344 65.7
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 6.2e-119 431.8 341 66.6
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.1e-118 431.0 341 66.3
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 1.4e-118 430.6 338 66.3
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.8e-118 430.3 340 66.8
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.8e-118 430.3 359 63.5
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 1.8e-118 430.3 373 64.9
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.4e-118 429.9 364 66.8
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.4e-118 429.9 364 66.8
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 2.4e-118 429.9 421 55.6
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 3.1e-118 429.5 331 66.5
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 3.1e-118 429.5 361 66.5
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 4.0e-118 429.1 339 66.7
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 6.9e-118 428.3 286 73.4
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 9.0e-118 427.9 332 66.3
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 9.0e-118 427.9 332 66.3
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 1.2e-117 427.6 365 59.5
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.0e-117 426.8 343 64.4
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 7.6e-117 424.9 334 67.4
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 1.0e-116 424.5 378 61.4
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 3.8e-116 422.5 362 61.0
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 3.8e-116 422.5 361 61.8
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 5.0e-116 422.2 324 67.6
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 8.4e-116 421.4 373 60.3
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.1e-115 421.0 344 64.5
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.4e-115 420.6 323 66.6
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 1.9e-115 420.2 367 62.1
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.2e-115 419.5 343 65.3
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 3.2e-115 419.5 340 66.5
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 1.2e-114 417.5 340 63.8
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.1e-114 416.8 328 66.8
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 2.1e-114 416.8 375 59.2
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 3.5e-114 416.0 386 62.2
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 1.5e-112 410.6 327 63.9
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 7.4e-112 408.3 320 62.8
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.3e-111 407.5 305 67.9
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.6e-111 407.1 375 57.6
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 2.2e-111 406.8 367 58.9
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 5.3e-110 402.1 341 60.1
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.2e-109 401.0 360 60.6
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 2.6e-109 399.8 393 53.9
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 1.3e-108 397.5 289 70.2
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.5e-104 384.0 341 58.4
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 9.7e-104 381.3 390 54.9
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 2.8e-103 379.8 388 55.2
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.4e-102 377.5 289 65.7
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 3.4e-101 372.9 391 52.9
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.0e-100 371.3 324 62.7
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 4.2e-99 365.9 301 63.5
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 6.1e-98 362.1 282 66.7
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.5e-96 357.5 298 67.4
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.7e-95 352.8 259 69.9
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 4.1e-94 349.4 259 69.1
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 2.0e-93 347.1 339 59.0
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 2.7e-90 336.7 368 50.3
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.2e-85 321.2 325 49.2
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 9.4e-83 311.6 293 55.6
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.0e-81 308.1 335 46.3
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.0e-81 306.6 326 46.6
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 4.4e-80 302.8 254 61.8
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 5.9e-77 292.4 237 62.9
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.1e-70 270.0 342 42.1
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 4.7e-66 256.1 334 43.4
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.0e-65 255.0 144 85.4
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 6.3e-63 245.7 308 40.6
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 9.5e-59 231.9 224 57.1
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 4.1e-54 216.5 307 39.1
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 3.9e-52 209.9 114 83.3
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 3.3e-51 206.8 113 85.8
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 7.8e-45 185.7 372 31.5
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.2e-37 161.8 343 37.0
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 3.9e-36 156.8 103 68.0
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 9.6e-35 152.1 159 55.3
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.2e-34 151.8 101 75.2
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.4e-33 147.5 77 90.9
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 3.1e-33 147.1 91 74.7
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 2.9e-31 140.6 77 84.4
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 9.3e-30 135.6 76 81.6
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 1.5e-19 101.7 129 48.8
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.2e-16 92.0 108 50.9
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 1.2e-16 92.0 79 58.2
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.3e-15 88.6 82 61.0
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 2.7e-13 80.9 54 68.5
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.1e-11 75.5 57 61.4
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 2.5e-06 57.8 137 32.8


User provided reference genes

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