Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 2034.2 1008 100.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1548.1 1012 79.5
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1384.0 1006 72.0
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1378.6 1009 72.2
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1345.9 1006 70.4
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1337.0 1004 68.5
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1299.3 1007 66.8
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1295.8 1004 67.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1266.1 1007 64.3
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1261.1 1003 64.1
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1260.7 1013 65.1
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1260.4 1005 65.2
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1258.8 1003 64.1
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1258.0 1004 64.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1255.4 1008 64.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1251.5 1005 64.8
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1251.5 1005 64.8
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1241.9 1007 64.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1233.8 1008 63.9
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1228.4 1018 62.7
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1224.9 1008 62.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1221.5 1010 62.9
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1220.3 1010 62.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1215.7 1010 62.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1212.6 1007 63.6
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1212.2 1010 62.5
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 1011 62.7
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 1010 63.6
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1209.5 1019 61.8
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 1007 62.8
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 1005 63.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 1006 62.3
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1202.6 1011 62.9
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1202.6 1009 62.0
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1202.2 1009 61.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1200.3 1036 63.1
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1197.2 1011 62.9
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1194.9 1003 63.1
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1194.9 1004 61.0
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1194.5 1019 61.7
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1194.1 1011 62.6
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1192.9 1007 62.1
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1191.8 1003 62.1
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1191.4 1004 62.8
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1190.3 1006 61.2
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1189.1 1010 61.6
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1189.1 1005 61.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1186.8 1002 61.4
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1182.5 1029 60.6
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1181.4 1005 60.8
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1177.2 1007 60.5
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1175.6 1004 61.8
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1169.8 1006 60.0
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1168.3 1011 60.3
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1165.2 1004 60.8
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1162.1 1004 60.0
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1161.4 1063 59.5
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1157.5 1003 59.7
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1156.7 1003 60.7
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1156.7 1006 60.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 1007 60.5
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1151.3 1005 59.4
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1148.7 975 61.0
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1144.4 1003 59.3
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1144.4 1007 59.9
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1140.9 1003 59.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1139.4 980 60.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1139.0 1062 58.3
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1137.1 1003 59.3
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1137.1 1006 59.3
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1136.3 1013 58.2
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1131.7 1004 59.2
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1129.4 1006 58.8
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1127.1 1006 58.8
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1112.4 1005 57.8
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1108.6 717 76.4
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1107.0 1005 57.5
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1105.1 1027 57.4
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1103.2 1005 57.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1102.8 1008 57.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1102.8 1005 57.3
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1102.0 1005 57.3
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1100.1 1002 57.6
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1091.6 1007 57.3
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1088.9 1005 56.8
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1088.2 1005 56.7
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1082.8 1004 57.9
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 6.9e-312 1073.5 1003 56.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 1.5e-309 1066.2 1005 56.0
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 2.4e-307 1058.9 1013 55.6
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 2.7e-306 1055.4 1005 57.9
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 1.1e-304 1050.0 928 60.2
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 4.3e-304 1048.1 953 59.7
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 4.1e-299 1031.6 1008 54.0
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 3.8e-292 1008.4 814 65.5
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.8e-286 989.6 853 61.4
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.5e-277 959.9 676 72.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.1e-250 868.2 1023 45.6
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 8.8e-249 864.4 657 67.6
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.3e-247 858.2 1019 45.6
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.4e-241 840.5 1019 45.0
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.2e-227 792.7 581 70.9
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.2e-210 737.6 1002 44.2
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.5e-208 730.7 1013 39.0
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.3e-207 727.6 494 74.3
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.0e-204 718.0 582 64.3
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 7.3e-203 711.8 483 74.3
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 8.6e-180 635.2 1100 36.1
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 9.3e-174 615.1 502 60.6
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.5e-173 613.2 441 69.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 8.1e-162 575.5 990 37.8
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.3e-146 525.0 625 46.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 3.4e-144 516.9 523 53.3
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.1e-133 479.6 378 63.2
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 9.4e-126 455.7 445 53.7
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.7e-125 454.1 687 40.8
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.9e-86 325.1 427 47.3
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.7e-74 285.4 189 73.5
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 2.8e-53 214.9 215 54.9
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 2.9e-50 204.9 455 29.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 4.6e-48 197.6 264 43.2
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.7e-42 179.1 880 24.2
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.1e-33 149.8 193 43.0
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.9e-28 130.6 93 64.5
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.0e-27 129.0 483 23.4
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.0e-27 129.0 161 42.2
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.9e-26 125.2 406 26.6
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 3.8e-26 124.8 140 50.0
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 5.7e-22 110.9 116 51.7
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 4.8e-21 107.8 196 37.8
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.2e-17 94.0 125 41.6
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 1.6e-16 92.8 42 92.9
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 6.1e-16 90.9 89 50.6
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.9e-10 72.0 76 47.4
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.8e-07 62.8 91 42.9


User provided reference genes

Program Settings