Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0272531 Rosa chinensis HOM05D000904 ORTHO05D006931 2.0e-198 695.7 382 100.0
FvH4_5g28020 Fragaria vesca HOM05D000904 ORTHO05D006931 5.1e-133 478.4 359 70.8
FAN18G0255 Fragaria x ananassa HOM05D000904 ORTHO05D006931 1.4e-122 443.7 361 67.9
RcHm_v2.0_Chr7g0221391 Rosa chinensis HOM05D000904 ORTHO05D006931 7.0e-82 308.5 158 93.7
MD15G1442300 Malus domestica HOM05D000904 ORTHO05D006931 7.3e-79 298.5 365 50.4
Prupe.1G585000 Prunus persica HOM05D000904 ORTHO05D006931 6.8e-69 265.4 370 53.2
QL02p103277 Quercus lobata HOM05D000904 ORTHO05D006931 3.0e-48 196.8 263 45.2
Haze_09988 Corylus avellana HOM05D000904 ORTHO05D006931 3.3e-47 193.4 219 51.1
Cfa004448 Carpinus fangiana HOM05D000904 ORTHO05D006931 1.6e-46 191.0 219 52.1
CiPaw.05G001900 Carya illinoinensis HOM05D000904 ORTHO05D006931 3.6e-46 189.9 219 48.4
GSVIVG01023150001 Vitis vinifera HOM05D000904 ORTHO05D006931 1.9e-42 177.6 225 44.0
Dinv29628 Davidia involucrata HOM05D000904 ORTHO05D006931 9.3e-42 175.3 202 48.5
arahy.Tifrunner.gnm1.ann1.AE80VE Arachis hypogaea HOM05D000904 ORTHO05D006931 1.6e-41 174.5 302 37.4
Atru.chr3.2070 Acer truncatum HOM05D000904 ORTHO05D006931 3.9e-40 169.9 278 38.8
Medtr2g005450 Medicago truncatula HOM05D000904 ORTHO05D006931 3.3e-39 166.8 248 41.9
Psat1g223160 Pisum sativum HOM05D000904 ORTHO05D006931 4.3e-39 166.4 264 42.8
Lalb_Chr20g0123821 Lupinus albus HOM05D000904 ORTHO05D006931 5.6e-39 166.0 196 46.9
arahy.Tifrunner.gnm1.ann1.V0D4VX Arachis hypogaea HOM05D000904 ORTHO05D006931 7.4e-39 165.6 254 39.8
VMungo0540G1910 Vigna mungo HOM05D000904 ORTHO05D006931 7.4e-39 165.6 263 39.9
CANSAT01G3012 Cannabis sativa HOM05D000904 ORTHO05D006931 3.6e-38 163.3 267 37.5
Ca_00027_v3 Cicer arietinum L. HOM05D000904 ORTHO05D006931 6.2e-38 162.5 257 41.6
arahy.Tifrunner.gnm1.ann1.7BJ6UQ Arachis hypogaea HOM05D000904 ORTHO05D006931 2.4e-37 160.6 308 36.0
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 2.4e-37 160.6 266 39.1
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 2.4e-37 160.6 266 39.1
Eucgr.G00080 Eucalyptus grandis HOM05D000904 ORTHO05D006931 5.3e-37 159.5 219 42.9
AL1G21050 Arabidopsis lyrata HOM05D000904 ORTHO05D006931 6.9e-37 159.1 287 40.1
Glyma.08G162800 Glycine max HOM05D000904 ORTHO05D006931 1.2e-36 158.3 280 37.5
THA.LOC104810192 Tarenaya hassleriana HOM05D000904 ORTHO05D006931 2.0e-36 157.5 109 64.2
Atru.chr6.324 Acer truncatum HOM05D000904 ORTHO05D006931 2.6e-36 157.1 262 37.4
TPR.G2096 Trifolium pratense HOM05D000904 ORTHO05D006931 2.6e-36 157.1 246 38.6
Lj5A282T78 Lonicera japonica HOM05D000904 ORTHO05D006931 3.4e-36 156.8 278 38.5
Phvul.006G221300 Phaseolus vulgaris HOM05D000904 ORTHO05D006931 4.5e-36 156.4 189 43.9
CSS0030434 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D006931 5.8e-36 156.0 243 42.4
COL.COLO4_22855 Corchorus olitorius HOM05D000904 ORTHO05D006931 7.6e-36 155.6 135 54.8
DCAR_001720 Daucus carota HOM05D000904 ORTHO05D006931 7.6e-36 155.6 260 36.9
AT1G10320 Arabidopsis thaliana HOM05D000904 ORTHO05D006931 9.9e-36 155.2 294 38.8
Aa31LG1G4600 Aethionema arabicum HOM05D000904 ORTHO05D006931 1.3e-35 154.8 148 53.4
CARHR010450 Cardamine hirsuta HOM05D000904 ORTHO05D006931 2.9e-35 153.7 230 41.7
BcaNung05228 Brassica carinata HOM05D000904 ORTHO05D006931 1.4e-34 151.4 209 42.6
TWI59G0191 Tripterygium wilfordii HOM05D000904 ORTHO05D006931 1.4e-34 151.4 370 32.7
Cpa.g.sc173.41 Carica papaya HOM05D000904 ORTHO05D006931 1.9e-34 151.0 151 50.3
Lj5g0025119 Lotus japonicus HOM05D000904 ORTHO05D006931 7.1e-34 149.1 258 38.0
Ciclev10003415m.g Citrus clementina HOM05D000904 ORTHO05D006931 9.3e-34 148.7 194 44.8
Actinidia26193 Actinidia chinensis HOM05D000904 ORTHO05D006931 1.2e-33 148.3 206 43.7
Nitab4.5_0008306g0010 Nicotiana tabacum HOM05D000904 ORTHO05D006931 1.6e-33 147.9 268 36.2
Sed0005680 Sechium edule HOM05D000904 ORTHO05D006931 1.6e-33 147.9 230 42.2
vmacro19831 Vaccinium macrocarpon HOM05D000904 ORTHO05D006931 1.6e-33 147.9 253 40.3
TAR628G1213 Trochodendron aralioides HOM05D000904 ORTHO05D006931 2.1e-33 147.5 194 44.8
Manes.10G111800 Manihot esculenta HOM05D000904 ORTHO05D006931 2.7e-33 147.1 374 33.4
Duzib160G0493 Durio zibethinus HOM05D000904 ORTHO05D006931 3.5e-33 146.7 322 33.9
ClCG10G007430 Citrullus lanatus HOM05D000904 ORTHO05D006931 4.6e-33 146.4 137 52.6
MELO3C016469.2 Cucumis melo HOM05D000904 ORTHO05D006931 6.0e-33 146.0 171 47.4
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 7.9e-33 145.6 274 36.1
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 7.9e-33 145.6 274 36.1
Nitab4.5_0004668g0060 Nicotiana tabacum HOM05D000904 ORTHO05D006931 7.9e-33 145.6 267 36.7
CsaV3_3G006640 Cucumis sativus L. HOM05D000904 ORTHO05D006931 1.0e-32 145.2 176 46.0
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 1.3e-32 144.8 274 36.1
Cc02_g23540 Coffea canephora HOM05D000904 ORTHO05D006931 1.3e-32 144.8 250 36.8
Sc06g0007800 Simmondsia chinensis HOM05D000904 ORTHO05D006931 1.3e-32 144.8 276 36.6
Solyc01g103090.4 Solanum lycopersicum HOM05D000904 ORTHO05D006931 1.8e-32 144.4 291 34.4
Potri.004G228600 Populus trichocarpa HOM05D000904 ORTHO05D006931 2.3e-32 144.1 269 37.9
Sp1g08920 Schrenkiella parvula HOM05D000904 ORTHO05D006931 2.3e-32 144.1 278 35.6
PSO063G1559 Papaver somniferum HOM05D000904 ORTHO05D006931 3.0e-32 143.7 237 41.4
Ciclev10024033m.g Citrus clementina HOM05D000904 ORTHO05D006931 3.9e-32 143.3 173 48.6
Glyma.15G244700 Glycine max HOM05D000904 ORTHO05D006931 3.9e-32 143.3 98 61.2
Nn5g27250 Nelumbo nucifera HOM05D000904 ORTHO05D006931 3.9e-32 143.3 282 37.6
SGA_v2.0_scaffold131G34405 Striga asiatica HOM05D000904 ORTHO05D006931 3.9e-32 143.3 282 36.2
ECA240G4408 Erigeron canadensis HOM05D000904 ORTHO05D006931 8.7e-32 142.1 237 38.0
Thhalv10009354m.g Eutrema salsugineum HOM05D000904 ORTHO05D006931 1.1e-31 141.7 280 37.9
MBI19_g32709_MAGBIO Magnolia biondii HOM05D000904 ORTHO05D006931 1.5e-31 141.4 128 55.5
Peaxi162Scf00011g01832 Petunia axillaris HOM05D000904 ORTHO05D006931 1.5e-31 141.4 247 37.2
Migut.B00725 Erythranthe guttata HOM05D000904 ORTHO05D006931 1.9e-31 141.0 218 39.4
Sopen01g045500 Solanum pennellii HOM05D000904 ORTHO05D006931 7.4e-31 139.0 293 34.1
HanXRQChr12g0381671 Helianthus annuus HOM05D000904 ORTHO05D006931 9.6e-31 138.7 229 38.9
Oeu043612.1 Olea europaea HOM05D000904 ORTHO05D006931 2.8e-30 137.1 278 35.3
Ciclev10010745m.g Citrus clementina HOM05D000904 ORTHO05D006931 3.7e-30 136.7 173 46.8
Aqoxy6G00043 Aquilegia oxysepala HOM05D000904 ORTHO05D006931 4.8e-30 136.3 285 36.8
PGSC0003DMG400020705 Solanum tuberosum HOM05D000904 ORTHO05D006931 3.1e-29 133.7 286 33.9
PSO421G0485 Papaver somniferum HOM05D000904 ORTHO05D006931 9.0e-29 132.1 236 37.7
CAN.G855.47 Capsicum annuum HOM05D000904 ORTHO05D006931 2.6e-28 130.6 244 36.5
MD05G1263000 Malus domestica HOM05D000904 ORTHO05D006931 4.5e-28 129.8 74 77.0
Gohir.D02G105700 Gossypium hirsutum HOM05D000904 ORTHO05D006931 5.8e-28 129.4 237 35.0
ATR1089G094 Amborella trichopoda HOM05D000904 ORTHO05D006931 7.6e-28 129.0 273 35.5
Lsat_1_v5_gn_9_121820 Lactuca sativa HOM05D000904 ORTHO05D006931 1.3e-27 128.3 207 37.7
HPP92_011424 Vanilla planifolia HOM05D000904 ORTHO05D006931 4.9e-27 126.3 194 37.6
HPP92_011434 Vanilla planifolia HOM05D000904 ORTHO05D006931 6.5e-27 125.9 194 37.6
Os02g0557500 Oryza sativa ssp. japonica HOM05D000904 ORTHO05D006931 1.4e-26 124.8 243 37.0
Zm00001eb243910 Zea mays HOM05D000904 ORTHO05D006931 1.4e-26 124.8 171 41.5
AUR62021311 Chenopodium quinoa HOM05D000904 ORTHO05D006931 1.9e-26 124.4 215 39.1
Carub.0001s0973 Capsella rubella HOM05D000904 ORTHO05D006931 1.6e-25 121.3 211 38.9
Hund00892 Selenicereus undatus HOM05D000904 ORTHO05D006931 7.9e-25 119.0 262 32.4
Gohir.A03G081600 Gossypium hirsutum HOM05D000904 ORTHO05D006931 1.3e-24 118.2 303 32.7
Gorai.005G120100 Gossypium raimondii HOM05D000904 ORTHO05D006931 1.3e-24 118.2 232 33.2
PGR042G3242 Punica granatum HOM05D000904 ORTHO05D006931 1.8e-24 117.9 251 35.5
AUR62043443 Chenopodium quinoa HOM05D000904 ORTHO05D006931 3.3e-23 113.6 262 34.0
Pp3c3_25240 Physcomitrium patens HOM05D000904 ORTHO05D006931 3.7e-22 110.2 106 46.2
BcaC05g24900 Brassica carinata HOM05D000904 ORTHO05D006931 1.4e-21 108.2 263 33.1
A06p06970 Brassica napus HOM05D000904 ORTHO05D006931 5.3e-21 106.3 247 33.6
Mapoly0079s0042 Marchantia polymorpha HOM05D000904 ORTHO05D006931 6.9e-21 105.9 243 32.5
AagrBONN_evm.TU.Sc2ySwM_228.1260 Anthoceros agrestis HOM05D000904 ORTHO05D006931 3.4e-20 103.6 80 53.8
SEGI_25881 Sequoiadendron giganteum HOM05D000904 ORTHO05D006931 1.9e-18 97.8 268 32.5
CDE05G0469 Ceratophyllum demersum HOM05D000904 ORTHO05D006931 2.3e-16 90.9 257 31.5
Ciclev10029935m.g Citrus clementina HOM05D000904 ORTHO05D006931 5.7e-15 86.3 63 61.9
unitig_578.g15961 Utricularia gibba HOM05D000904 ORTHO05D006931 2.0e-12 77.8 124 38.7
AUR62033228 Chenopodium quinoa HOM05D000904 ORTHO05D006931 3.4e-12 77.0 213 31.0
Ciclev10013954m.g Citrus clementina HOM05D000904 ORTHO05D006931 1.3e-11 75.1 92 45.7
CARHR070930 Cardamine hirsuta HOM05D000904 ORTHO05D033438 6.3e-06 56.2 41 58.5


User provided reference genes

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