Gene: BraA08t35316Z
General Information
Structural Information
- Species Brassica rapa
- Gene Identifier BraA08t35316Z
- Transcript Identifier BraA08t35316Z
- Gene Type Coding gene
- Location A08 : 23577303-23588592 : positive
Gene Family Information
- ID HOM05D000904
- #Genes/#Species 662/100
- Phylogenetic origin
- ID ORTHO05D005281
- #Genes/#Species 160/89
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- uniprot A0A3P6CBJ2
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0006760 | ISO | PLAZA Integrative Orthology | folic acid-containing compound metabolic process | AT1G10310 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016616 | ISO | PLAZA Integrative Orthology | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | AT1G10310 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0016491 | IEA | GOA Database | oxidoreductase activity | |
| GO:0016491 | IEA | InterPro | oxidoreductase activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0102131 | IEA | GOA Database | 3-oxo-glutaryl-[acp] methyl ester reductase activity | |
| GO:0102132 | IEA | GOA Database | 3-oxo-pimeloyl-[acp] methyl ester reductase activity | |
| GO:0004316 | IEA | GOA Database | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G10310 |
| GO:0089701 | IEA | GOA Database | U2AF complex | |
| GO:0089701 | IEA | InterPro | U2AF complex | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0009507 | IEA | GOA Database | chloroplast |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036770 | Ankyrin repeat-containing domain superfamily |
| IPR000571 | Zinc finger, CCCH-type |
| IPR035979 | RNA-binding domain superfamily |
| IPR036291 | NAD(P)-binding domain superfamily |
| IPR002347 | Short-chain dehydrogenase/reductase SDR |
| IPR002110 | Ankyrin repeat |
| IPR026961 | PGG domain |
| IPR009145 | U2 auxiliary factor small subunit |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR003954 | RNA recognition motif domain, eukaryote |
| Mapman id | Description |
|---|---|
| 16.2.4.3 | RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.splicing factor (RGH3) |