Gene: PGSC0003DMG400020705

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400020705
  • Transcript Identifier PGSC0003DMT400053361
  • Gene Type Coding gene
  • Location ST4.03ch01 : 79851701-79859774 : negative

Gene Family Information

  • ID HOM05D000904
  • #Genes/#Species 662/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37435600
  • id PGSC0003DMG400020705.v4.03
  • uniprot M1BUV1

Descriptions

  • Description U2 snrnp auxiliary factor, small subunit
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0030628
IBA
GOA Databasepre-mRNA 3'-splice site binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0089701
IBA
IEA
GOA DatabaseU2AF complex
GO:0089701
IEA
InterProU2AF complex
GO:0005681
IBA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000571 Zinc finger, CCCH-type
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR009145 U2 auxiliary factor small subunit
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.4.3 RNA processing.pre-mRNA splicing.U12-type-intron-specific minor spliceosome.splicing factor (RGH3)