Gene: Carub.0001s0973
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0001s0973
- Transcript Identifier Carub.0001s0973.1
- Gene Type Coding gene
- Location scaffold_1 : 3468564-3469923 : negative
Gene Family Information
- ID HOM05D000904
- #Genes/#Species 662/100
- Phylogenetic origin
- ID ORTHO05D006931
- #Genes/#Species 136/88
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Carub.0001s0973.v1.1
- pacid 39230059
Descriptions
- Description PTHR12620//PTHR12620:SF4 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 5
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003676 | ISO | PLAZA Homology (enrichment) | nucleic acid binding | HOM05D000904 |
| GO:0046872 | ISO | PLAZA Homology (enrichment) | metal ion binding | HOM05D000904 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0089701 | IEA | InterPro | U2AF complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR009145 | U2 auxiliary factor small subunit |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |