Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0267351 Rosa chinensis HOM05D001201 ORTHO05D001100 1.2e-250 869.4 440 100.0
FvH4_2g10170 Fragaria vesca HOM05D001201 ORTHO05D001100 2.4e-190 669.1 426 80.8
FAN24G3154 Fragaria x ananassa HOM05D001201 ORTHO05D001100 1.3e-188 663.3 426 80.3
FAN27G2238 Fragaria x ananassa HOM05D001201 ORTHO05D001100 8.4e-188 660.6 426 79.8
FAN15G3379 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.4e-187 659.1 426 79.3
FAN20G2479 Fragaria x ananassa HOM05D001201 ORTHO05D001100 4.2e-187 658.3 426 79.6
Prupe.7G005000 Prunus persica HOM05D001201 ORTHO05D001100 5.9e-125 451.8 443 59.8
MD07G1071800 Malus domestica HOM05D001201 ORTHO05D001100 3.7e-111 406.0 440 57.3
MD09G1259000 Malus domestica HOM05D001201 ORTHO05D001100 1.7e-100 370.5 531 47.1
Haze_02614 Corylus avellana HOM05D001201 ORTHO05D001100 3.3e-67 260.0 443 41.3
QL04p041091 Quercus lobata HOM05D001201 ORTHO05D001100 1.6e-66 257.7 439 41.9
Cfa011221 Carpinus fangiana HOM05D001201 ORTHO05D001100 1.7e-63 247.7 442 40.0
CiPaw.13G036100 Carya illinoinensis HOM05D001201 ORTHO05D001100 8.4e-63 245.4 430 40.7
Thecc.10G101300 Theobroma cacao HOM05D001201 ORTHO05D001100 6.7e-60 235.7 431 37.6
MD17G1253500 Malus domestica HOM05D001201 ORTHO05D001100 1.6e-58 231.1 471 38.9
Dinv20843 Davidia involucrata HOM05D001201 ORTHO05D001100 2.9e-55 220.3 470 35.5
TAR623G1502 Trochodendron aralioides HOM05D001201 ORTHO05D001100 1.2e-53 214.9 434 37.1
Dinv30660 Davidia involucrata HOM05D001201 ORTHO05D001100 3.9e-52 209.9 442 37.8
Manes.07G091800 Manihot esculenta HOM05D001201 ORTHO05D001100 6.9e-49 199.1 426 36.6
COL.COLO4_27244 Corchorus olitorius HOM05D001201 ORTHO05D001100 1.3e-47 194.9 408 36.0
Manes.10G055200 Manihot esculenta HOM05D001201 ORTHO05D001100 2.7e-45 187.2 416 38.2
Duzib114G0475 Durio zibethinus HOM05D001201 ORTHO05D001100 7.9e-45 185.7 466 33.3
CSS0002130 Camellia sinensis var. sinensis HOM05D001201 ORTHO05D001100 1.3e-44 184.9 327 40.7
TAR369G0069 Trochodendron aralioides HOM05D001201 ORTHO05D001100 1.8e-44 184.5 428 35.3
Ciclev10030474m.g Citrus clementina HOM05D001201 ORTHO05D001100 2.3e-44 184.1 441 34.2
Gorai.002G145100 Gossypium raimondii HOM05D001201 ORTHO05D001100 4.8e-42 176.4 421 34.9
Gohir.D01G119000 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.4e-41 174.9 421 35.4
Cpa.g.sc128.52 Carica papaya HOM05D001201 ORTHO05D001100 3.1e-41 173.7 436 34.4
Prupe.2G089400 Prunus persica HOM05D001201 ORTHO05D001100 1.3e-39 168.3 209 53.1
Atru.chr12.965 Acer truncatum HOM05D001201 ORTHO05D001100 1.1e-38 165.2 219 46.6
CANSAT56G1981 Cannabis sativa HOM05D001201 ORTHO05D001100 8.8e-36 155.6 409 36.9
Rhsim03G0106400 Rhododendron simsii HOM05D001201 ORTHO05D001100 3.7e-34 150.2 229 45.0
MD02G1245300 Malus domestica HOM05D001201 ORTHO05D001100 1.8e-33 147.9 142 62.7
vmacro07222 Vaccinium macrocarpon HOM05D001201 ORTHO05D001100 9.1e-33 145.6 424 33.5
TWI63G1581 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 3.4e-32 143.7 373 32.4
Lj3A932G50 Lonicera japonica HOM05D001201 ORTHO05D001100 5.9e-32 142.9 440 33.0
Actinidia06708 Actinidia chinensis HOM05D001201 ORTHO05D001100 1.3e-31 141.7 310 38.4
Potri.008G025900 Populus trichocarpa HOM05D001201 ORTHO05D001100 3.8e-31 140.2 436 34.4
Hma1.2p1_0567F.1_g180040 Hydrangea macrophylla HOM05D001201 ORTHO05D015214 1.2e-29 135.2 378 32.5
Sabra08G0017600 Salix brachista HOM05D001201 ORTHO05D001100 7.9e-29 132.5 434 32.7
Glyma.10G202150 Glycine max HOM05D001201 ORTHO05D001100 2.3e-28 131.0 456 30.9
Glyma.20G188300 Glycine max HOM05D001201 ORTHO05D001100 3.9e-28 130.2 345 35.7
Nn6g33515 Nelumbo nucifera HOM05D001201 ORTHO05D001100 8.8e-28 129.0 460 30.9
Eucgr.J01016 Eucalyptus grandis HOM05D001201 ORTHO05D001100 1.3e-26 125.2 450 31.6
Medtr1g492760 Medicago truncatula HOM05D001201 ORTHO05D001100 8.2e-26 122.5 433 30.7
Potri.010G234400 Populus trichocarpa HOM05D001201 ORTHO05D001100 1.1e-25 122.1 407 31.2
TWI38G1634 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 1.1e-25 122.1 381 30.2
Sabra10G0181700 Salix brachista HOM05D001201 ORTHO05D001100 4.1e-25 120.2 410 31.5
Cc02_g10250 Coffea canephora HOM05D001201 ORTHO05D001100 7.7e-24 115.9 457 29.3
QL07p040602 Quercus lobata HOM05D001201 ORTHO05D001100 7.7e-24 115.9 409 30.3
Ca_10493_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 1.0e-23 115.5 441 29.3
arahy.Tifrunner.gnm1.ann1.66FLD0 Arachis hypogaea HOM05D001201 ORTHO05D001100 2.9e-23 114.0 420 30.2
Psat6g177080 Pisum sativum HOM05D001201 ORTHO05D001100 2.9e-23 114.0 436 30.0
Haze_19533 Corylus avellana HOM05D001201 ORTHO05D001100 1.9e-22 111.3 425 28.2
GSVIVG01034713001 Vitis vinifera HOM05D001201 ORTHO05D001100 1.9e-22 111.3 236 38.1
arahy.Tifrunner.gnm1.ann1.CUT3DD Arachis hypogaea HOM05D001201 ORTHO05D001100 3.2e-22 110.5 419 29.6
Atru.chr8.1639 Acer truncatum HOM05D001201 ORTHO05D001100 5.5e-22 109.8 430 28.1
Nitab4.5_0002259g0070 Nicotiana tabacum HOM05D001201 ORTHO05D001100 8.0e-21 105.9 408 30.4
Gohir.A01G129700 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.4e-20 105.1 182 42.9
vmacro08815 Vaccinium macrocarpon HOM05D001201 ORTHO05D001100 5.2e-20 103.2 436 28.0
Nn2g13995 Nelumbo nucifera HOM05D001201 ORTHO05D001100 1.5e-19 101.7 465 25.4
PGR044G1748 Punica granatum HOM05D001201 ORTHO05D001100 2.6e-19 100.9 424 26.9
ClCG05G021570 Citrullus lanatus HOM05D001201 ORTHO05D001100 1.3e-18 98.6 166 43.4
Oeu027978.3 Olea europaea HOM05D001201 ORTHO05D001100 1.3e-18 98.6 217 35.0
TAR633G1723 Trochodendron aralioides HOM05D001201 ORTHO05D001100 2.2e-18 97.8 422 29.1
Dinv21260 Davidia involucrata HOM05D001201 ORTHO05D015214 6.3e-18 96.3 231 34.6
CSS0047502 Camellia sinensis var. sinensis HOM05D001201 ORTHO05D001100 1.1e-17 95.5 274 35.0
PSO063G2265 Papaver somniferum HOM05D001201 ORTHO05D001100 1.8e-17 94.7 409 31.8
Nitab4.5_0001807g0090 Nicotiana tabacum HOM05D001201 ORTHO05D001100 2.4e-17 94.4 433 29.1
PSO339G3200 Papaver somniferum HOM05D001201 ORTHO05D001100 5.3e-17 93.2 412 30.1
Rhsim04G0135900 Rhododendron simsii HOM05D001201 ORTHO05D001100 7.0e-17 92.8 411 28.5
Sed0011723 Sechium edule HOM05D001201 ORTHO05D001100 7.0e-17 92.8 121 51.2
Oeu026559.4 Olea europaea HOM05D001201 ORTHO05D001100 9.1e-17 92.4 445 28.5
Dinv19826 Davidia involucrata HOM05D001201 ORTHO05D015214 1.6e-16 91.7 221 37.1
MELO3C012368.2 Cucumis melo HOM05D001201 ORTHO05D001100 2.0e-16 91.3 121 49.6
CsaV3_5G035660 Cucumis sativus L. HOM05D001201 ORTHO05D001100 3.5e-16 90.5 166 41.0
TPR.G2504 Trifolium pratense HOM05D001201 ORTHO05D001100 3.5e-16 90.5 487 26.3
Lj5g0026634 Lotus japonicus HOM05D001201 ORTHO05D001100 1.0e-15 89.0 331 30.5
Lsat_1_v5_gn_0_17001 Lactuca sativa HOM05D001201 ORTHO05D001100 2.2e-15 87.8 202 37.6
Lalb_Chr02g0151321 Lupinus albus HOM05D001201 ORTHO05D001100 2.2e-15 87.8 340 30.9
DCAR_006374 Daucus carota HOM05D001201 ORTHO05D001100 3.8e-15 87.0 169 40.8
Sopen11g003420 Solanum pennellii HOM05D001201 ORTHO05D001100 6.5e-15 86.3 176 37.5
Solyc11g007580.3 Solanum lycopersicum HOM05D001201 ORTHO05D001100 1.1e-14 85.5 184 36.4
Rhsim03G0081500 Rhododendron simsii HOM05D001201 ORTHO05D001100 5.5e-14 83.2 186 39.8
Sed0022197 Sechium edule HOM05D001201 ORTHO05D001100 5.5e-14 83.2 261 35.2
Gorai.009G408300 Gossypium raimondii HOM05D001201 ORTHO05D001100 9.4e-14 82.4 200 33.0
Phvul.007G223600 Phaseolus vulgaris HOM05D001201 ORTHO05D001100 9.4e-14 82.4 201 36.3
TAR374G1051 Trochodendron aralioides HOM05D001201 ORTHO05D015214 1.2e-13 82.0 193 37.3
Peaxi162Scf00244g00044 Petunia axillaris HOM05D001201 ORTHO05D001100 2.1e-13 81.3 432 26.6
VMungo0720G0212 Vigna mungo HOM05D001201 ORTHO05D001100 3.6e-13 80.5 187 36.9
Lalb_Chr21g0315671 Lupinus albus HOM05D001201 ORTHO05D001100 4.7e-13 80.1 180 35.6
CSS0012668 Camellia sinensis var. sinensis HOM05D001201 ORTHO05D001100 6.1e-13 79.7 96 51.0
Gohir.A04G066400 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.0e-12 79.0 199 32.7
SalBow6G6340 Salvia bowleyana HOM05D001201 ORTHO05D001100 1.0e-12 79.0 175 36.0
Gohir.D04G104500 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.4e-12 78.6 200 33.5
Sp6g38200 Schrenkiella parvula HOM05D001201 ORTHO05D001100 2.3e-12 77.8 430 28.1
TWI77G0704 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 3.0e-12 77.4 211 33.6
MD12G1017600 Malus domestica HOM05D001201 ORTHO05D001100 5.2e-12 76.6 180 33.9
Migut.F00888 Erythranthe guttata HOM05D001201 ORTHO05D001100 6.8e-12 76.3 184 37.5
Duzib093G0950 Durio zibethinus HOM05D001201 ORTHO05D001100 8.8e-12 75.9 197 35.5
Sc09g0005580 Simmondsia chinensis HOM05D001201 ORTHO05D001100 8.8e-12 75.9 218 32.6
Gohir.D09G137800 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.2e-11 75.5 250 33.2
Gorai.006G158300 Gossypium raimondii HOM05D001201 ORTHO05D001100 1.2e-11 75.5 250 33.2
MSTRG.19228 Avicennia marina HOM05D001201 ORTHO05D001100 2.0e-11 74.7 431 27.1
CAN.G135.68 Capsicum annuum HOM05D001201 ORTHO05D001100 2.0e-11 74.7 290 31.0
CiPaw.09G008500 Carya illinoinensis HOM05D001201 ORTHO05D001100 2.0e-11 74.7 108 44.4
MD14G1015300 Malus domestica HOM05D001201 ORTHO05D001100 2.0e-11 74.7 180 33.9
arahy.Tifrunner.gnm1.ann1.N246S2 Arachis hypogaea HOM05D001201 ORTHO05D001100 2.6e-11 74.3 151 37.1
Thecc.05G080600 Theobroma cacao HOM05D001201 ORTHO05D001100 2.6e-11 74.3 198 33.3
MSTRG.9109 Avicennia marina HOM05D001201 ORTHO05D001100 3.4e-11 73.9 463 23.3
COL.COLO4_29819 Corchorus olitorius HOM05D001201 ORTHO05D001100 3.4e-11 73.9 200 34.5
HanXRQChr04g0108701 Helianthus annuus HOM05D001201 ORTHO05D001100 3.4e-11 73.9 206 35.4
THA.LOC104816454 Tarenaya hassleriana HOM05D001201 ORTHO05D001100 3.4e-11 73.9 445 27.4
TPR.G10256 Trifolium pratense HOM05D001201 ORTHO05D001100 3.4e-11 73.9 164 38.4
Peaxi162Scf00110g01921 Petunia axillaris HOM05D001201 ORTHO05D001100 4.4e-11 73.6 191 32.5
TWI53G2113 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 5.7e-11 73.2 220 33.6
Ca_11623_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 7.5e-11 72.8 103 47.6
arahy.Tifrunner.gnm1.ann1.GS0SHW Arachis hypogaea HOM05D001201 ORTHO05D001100 9.8e-11 72.4 151 36.4
Gohir.A09G136700 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.3e-10 72.0 250 32.0
Glyma.10G065900 Glycine max HOM05D001201 ORTHO05D001100 2.2e-10 71.2 163 35.0
Aqoxy1G00942 Aquilegia oxysepala HOM05D001201 ORTHO05D001100 2.8e-10 70.9 100 48.0
PGR004G0133 Punica granatum HOM05D001201 ORTHO05D001100 4.8e-10 70.1 225 31.1
Hund04064 Selenicereus undatus HOM05D001201 ORTHO05D001100 4.8e-10 70.1 104 40.4
Oeu032421.3 Olea europaea HOM05D001201 ORTHO05D001100 6.3e-10 69.7 417 25.7
SalBow3G3680 Salvia bowleyana HOM05D001201 ORTHO05D001100 8.3e-10 69.3 184 36.4
Potri.006G116000 Populus trichocarpa HOM05D001201 ORTHO05D001100 1.1e-09 68.9 135 40.7
Solyc10g083630.2 Solanum lycopersicum HOM05D001201 ORTHO05D001100 1.1e-09 68.9 191 32.5
Lj3A1003T41 Lonicera japonica HOM05D001201 ORTHO05D001100 1.4e-09 68.6 168 35.1
Prupe.7G118000 Prunus persica HOM05D001201 ORTHO05D001100 1.8e-09 68.2 142 37.3
unitig_37.g12333 Utricularia gibba HOM05D001201 ORTHO05D001100 1.8e-09 68.2 99 43.4
Ca_11125_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 2.4e-09 67.8 90 51.1
Ca_20517_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 2.4e-09 67.8 90 51.1
Oeu059852.1 Olea europaea HOM05D001201 ORTHO05D001100 3.1e-09 67.4 105 44.8
ECA238G1134 Erigeron canadensis HOM05D001201 ORTHO05D001100 4.1e-09 67.0 410 27.3
Ciclev10010892m.g Citrus clementina HOM05D001201 ORTHO05D001100 5.4e-09 66.6 188 31.9
Nitab4.5_0005311g0020 Nicotiana tabacum HOM05D001201 ORTHO05D001100 5.4e-09 66.6 162 34.6
Nitab4.5_0000132g0200 Nicotiana tabacum HOM05D001201 ORTHO05D001100 2.0e-08 64.7 162 34.6
PSO339G5206 Papaver somniferum HOM05D001201 ORTHO05D001100 2.7e-08 64.3 205 33.2
GSVIVG01033777001 Vitis vinifera HOM05D001201 ORTHO05D001100 2.7e-08 64.3 63 61.9
Psat3g035920 Pisum sativum HOM05D001201 ORTHO05D001100 4.5e-08 63.5 90 50.0
Sopen10g033100 Solanum pennellii HOM05D001201 ORTHO05D001100 4.5e-08 63.5 191 31.4
Psat6g079040 Pisum sativum HOM05D001201 ORTHO05D001100 5.9e-08 63.2 122 40.2
C09p72210 Brassica napus HOM05D001201 ORTHO05D001100 7.7e-08 62.8 223 35.0
BolC9t59965H Brassica oleracea HOM05D001201 ORTHO05D001100 7.7e-08 62.8 223 35.0
FvH4_3g04410 Fragaria vesca HOM05D001201 ORTHO05D001100 1.3e-07 62.0 197 31.0
CAN.G1138.12 Capsicum annuum HOM05D001201 ORTHO05D001100 1.7e-07 61.6 202 30.2
Medtr1g061220 Medicago truncatula HOM05D001201 ORTHO05D001100 1.7e-07 61.6 98 44.9
PSO384G4302 Papaver somniferum HOM05D001201 ORTHO05D001100 1.7e-07 61.6 214 32.2
Manes.08G020500 Manihot esculenta HOM05D001201 ORTHO05D001100 2.9e-07 60.8 181 34.3
AL6G14210 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 3.8e-07 60.5 210 33.8
Oeu040540.1 Olea europaea HOM05D001201 ORTHO05D001100 3.8e-07 60.5 432 25.2
FAN21G3547 Fragaria x ananassa HOM05D001201 ORTHO05D001100 5.0e-07 60.1 273 28.9
TPR.G5703 Trifolium pratense HOM05D001201 ORTHO05D001100 5.0e-07 60.1 112 42.0
Lj5g0003988 Lotus japonicus HOM05D001201 ORTHO05D001100 6.5e-07 59.7 137 37.2
HPP92_005761 Vanilla planifolia HOM05D001201 ORTHO05D001100 8.5e-07 59.3 71 52.1
FAN16G0828 Fragaria x ananassa HOM05D001201 ORTHO05D001100 1.5e-06 58.5 266 29.3
Lalb_Chr01g0018331 Lupinus albus HOM05D001201 ORTHO05D001100 1.5e-06 58.5 210 31.4
HanXRQChr14g0456351 Helianthus annuus HOM05D001201 ORTHO05D001100 1.9e-06 58.2 245 31.4
HanXRQChr07g0202991 Helianthus annuus HOM05D001201 ORTHO05D001100 2.5e-06 57.8 171 34.5
SGA_v2.0_scaffold40G15408 Striga asiatica HOM05D001201 ORTHO05D001100 2.5e-06 57.8 172 34.3
CARHR208710 Cardamine hirsuta HOM05D001201 ORTHO05D001100 3.2e-06 57.4 244 29.9
ClCG04G009770 Citrullus lanatus HOM05D001201 ORTHO05D001100 3.2e-06 57.4 150 35.3
A10p31520 Brassica napus HOM05D001201 ORTHO05D001100 4.2e-06 57.0 219 33.3
BraA10t45198Z Brassica rapa HOM05D001201 ORTHO05D001100 4.2e-06 57.0 219 33.3
ECA232G0849 Erigeron canadensis HOM05D001201 ORTHO05D001100 4.2e-06 57.0 240 30.4
FAN11G1782 Fragaria x ananassa HOM05D001201 ORTHO05D001100 4.2e-06 57.0 197 29.9
Peaxi162Scf00433g00067 Petunia axillaris HOM05D001201 ORTHO05D001100 4.2e-06 57.0 215 27.9
RcHm_v2.0_Chr3g0472091 Rosa chinensis HOM05D001201 ORTHO05D001100 4.2e-06 57.0 205 29.8
BcaC06g32166 Brassica carinata HOM05D001201 ORTHO05D001100 5.5e-06 56.6 219 34.7
FAN05G3005 Fragaria x ananassa HOM05D001201 ORTHO05D001100 5.5e-06 56.6 197 32.0
FAN05G4586 Fragaria x ananassa HOM05D001201 ORTHO05D001100 5.5e-06 56.6 197 32.0
ECA233G0191 Erigeron canadensis HOM05D001201 ORTHO05D001100 7.2e-06 56.2 93 44.1
FAN02G1301 Fragaria x ananassa HOM05D001201 ORTHO05D001100 7.2e-06 56.2 231 29.4
Sc20g0006010 Simmondsia chinensis HOM05D001201 ORTHO05D001100 9.4e-06 55.8 75 50.7


User provided reference genes

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