Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 8.3e-28 126.3 64 100.0
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 8.6e-25 116.3 63 93.7
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 3.7e-20 100.9 63 81.0
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 3.7e-20 100.9 63 81.0
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 7.0e-19 96.7 65 80.0
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 9.2e-19 96.3 62 77.4
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 3.5e-18 94.4 62 75.8
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 2.9e-12 74.7 66 63.6
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 8.3e-12 73.2 63 63.5
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 3.2e-11 71.2 55 65.5
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 3.2e-11 71.2 62 61.3
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 3.2e-11 71.2 40 85.0
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 3.2e-11 71.2 38 89.5
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 5.4e-11 70.5 62 62.9
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 5.4e-11 70.5 62 59.7
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 1.2e-10 69.3 55 65.5
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 1.6e-10 68.9 49 71.4
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 2.0e-10 68.6 69 55.1
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 2.0e-10 68.6 69 55.1
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 3.5e-10 67.8 51 64.7
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 3.5e-10 67.8 69 55.1
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 4.6e-10 67.4 59 59.3
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 6.0e-10 67.0 62 58.1
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 7.8e-10 66.6 50 70.0
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 7.8e-10 66.6 64 62.5
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 1.7e-09 65.5 38 76.3
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.7e-09 65.5 50 68.0
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 1.7e-09 65.5 49 69.4
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 1.7e-09 65.5 43 69.8
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 2.3e-09 65.1 52 63.5
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 3.0e-09 64.7 38 78.9
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 3.0e-09 64.7 64 53.1
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 3.0e-09 64.7 50 66.0
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 3.0e-09 64.7 50 66.0
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 3.9e-09 64.3 54 61.1
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 3.9e-09 64.3 64 59.4
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.9e-09 64.3 52 67.3
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.9e-09 64.3 52 67.3
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 5.0e-09 63.9 52 61.5
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 5.0e-09 63.9 52 61.5
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 5.0e-09 63.9 39 74.4
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 5.0e-09 63.9 57 56.1
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 5.0e-09 63.9 57 56.1
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 6.6e-09 63.5 66 50.0
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 8.6e-09 63.2 50 62.0
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 1.1e-08 62.8 60 60.0
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 1.1e-08 62.8 60 60.0
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 1.5e-08 62.4 54 59.3
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 1.5e-08 62.4 57 57.9
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.5e-08 62.4 41 68.3
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 1.9e-08 62.0 52 59.6
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 1.9e-08 62.0 63 55.6
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 2.5e-08 61.6 52 61.5
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 3.3e-08 61.2 64 54.7
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 3.3e-08 61.2 38 76.3
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.3e-08 60.8 41 75.6
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 4.3e-08 60.8 41 75.6
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 4.3e-08 60.8 49 65.3
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 5.6e-08 60.5 38 73.7
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 5.6e-08 60.5 64 60.9
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 5.6e-08 60.5 64 57.8
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 7.3e-08 60.1 50 62.0
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 7.3e-08 60.1 60 58.3
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 9.5e-08 59.7 63 54.0
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.2e-07 59.3 63 55.6
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.6e-07 58.9 41 73.2
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.6e-07 58.9 63 55.6
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.6e-07 58.9 50 62.0
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.6e-07 58.9 36 75.0
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 2.1e-07 58.5 50 58.0
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 2.1e-07 58.5 37 78.4
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 2.1e-07 58.5 68 50.0
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 2.1e-07 58.5 42 64.3
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 2.8e-07 58.2 67 52.2
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 2.8e-07 58.2 67 52.2
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 2.8e-07 58.2 67 52.2
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 3.6e-07 57.8 50 64.0
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 3.6e-07 57.8 53 56.6
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 3.6e-07 57.8 63 52.4
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 4.7e-07 57.4 59 50.8
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 4.7e-07 57.4 63 50.8
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 6.2e-07 57.0 64 51.6
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 6.2e-07 57.0 71 49.3
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 6.2e-07 57.0 67 47.8
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 6.2e-07 57.0 59 55.9
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 8.1e-07 56.6 63 49.2
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 8.1e-07 56.6 67 50.7
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 8.1e-07 56.6 49 61.2
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 3.1e-06 54.7 51 54.9
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 5.2e-06 53.9 40 62.5
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 6.8e-06 53.5 62 51.6


User provided reference genes

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