Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 3780.3 1905 100.0
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 3416.3 1911 90.6
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 3397.1 1948 89.0
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 3392.8 1911 89.9
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 3234.5 2087 81.3
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 3209.9 2410 71.7
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 3008.8 1915 79.6
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2888.2 1914 77.0
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2546.5 1917 67.6
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2512.3 1963 65.9
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2504.6 1915 66.9
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2378.6 1921 64.3
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2350.1 1922 63.2
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2340.1 1924 63.1
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2336.6 1914 62.5
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2314.3 1917 62.6
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2302.3 1920 62.8
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2288.1 1921 61.3
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2271.9 1903 62.0
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2261.5 1918 60.1
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2251.1 1934 60.4
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2248.8 1922 60.2
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2244.9 1916 60.0
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2237.2 1923 61.3
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2231.4 1928 59.3
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2227.2 1912 60.3
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2217.2 1918 60.2
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2216.4 1923 60.7
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2202.6 1948 60.0
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2187.5 1915 59.0
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 2172.5 1919 58.8
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2170.6 1923 59.0
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2165.2 1911 58.5
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2154.4 1920 58.8
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2149.4 1944 58.3
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2147.1 1921 58.6
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 2130.9 1917 58.1
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 2120.5 1922 58.0
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 2111.3 1967 56.4
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2109.0 1944 57.7
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 2102.4 1922 57.4
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 2097.4 1920 57.6
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 2090.8 1916 57.6
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 2088.9 1921 57.5
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 2072.4 2036 54.7
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 2052.3 1946 56.8
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 2051.9 1919 56.6
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 2036.9 1920 55.5
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2028.4 1917 55.3
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 2017.7 1939 55.6
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1981.1 1929 53.9
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1969.5 1917 53.7
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1962.6 1926 55.2
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1952.6 1860 54.8
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1948.3 1798 57.1
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1947.6 1915 54.1
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1944.1 1921 53.9
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1931.4 1925 52.9
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1927.1 1921 53.6
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1920.2 1927 52.5
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1905.6 1932 53.2
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1896.3 1927 53.9
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1892.1 1922 52.7
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1885.9 1914 51.9
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1879.8 1922 53.5
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1879.4 1963 51.4
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1859.0 1910 51.4
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1853.6 1915 51.7
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1853.2 1908 51.7
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1852.0 1913 51.0
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1845.5 1870 53.5
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1840.9 1912 51.4
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1835.5 1924 51.8
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1828.9 1931 51.0
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1827.8 1923 51.2
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1827.8 1928 51.8
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1827.4 1910 51.2
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1824.3 1906 51.4
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1822.4 1922 51.1
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1816.2 1938 50.6
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1815.0 1911 51.5
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1812.7 1916 51.0
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1808.9 1919 50.9
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1805.4 1916 50.8
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1794.6 1932 50.5
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1793.1 1851 52.1
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1782.3 1825 51.9
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1747.6 1913 50.4
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1726.1 1927 49.7
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1721.4 1972 48.5
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1717.6 1863 50.6
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1704.1 1916 49.3
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1628.6 1958 46.2
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1612.0 1328 62.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1542.3 1704 49.1
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1488.4 1219 63.7
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1486.1 1581 51.3
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1444.1 1961 41.7
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1419.8 1960 41.2
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1342.8 1950 40.6
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1234.6 885 71.2
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1156.4 2068 35.7
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1142.5 1108 54.1
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 0.0e+00 1084.7 2039 34.4
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 1.4e-308 1063.9 1144 49.8
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 4.3e-305 1052.4 1693 38.5
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 7.3e-297 1025.0 2001 34.5
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 6.5e-269 932.2 1934 32.9
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 8.5e-261 905.2 1106 45.2
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 2.0e-230 804.3 777 54.7
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 8.9e-202 709.1 899 42.7
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 3.9e-141 507.7 703 42.5
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 2.0e-92 345.9 259 64.9
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.1e-66 260.4 174 77.6
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 1.6e-65 256.5 570 31.8
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 7.8e-65 254.2 171 73.1
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 6.9e-53 214.5 209 57.9
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 2.9e-51 209.1 219 45.7
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-50 204.9 645 26.7
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 7.1e-50 204.5 219 54.3
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 9.3e-50 204.1 164 61.0
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 4.6e-49 201.8 406 31.5
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.1e-46 193.0 206 44.2
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 9.0e-45 187.6 138 70.3
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.0e-35 157.5 112 66.1
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 2.2e-30 139.8 209 33.5
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 2.2e-27 129.8 95 68.4
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 1.3e-22 114.0 122 53.3
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 1.3e-22 114.0 83 65.1
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 6.3e-22 111.7 104 60.6
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.8e-21 110.2 184 35.9
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 2.9e-19 102.8 81 64.2
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 8.8e-16 91.3 126 39.7
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.4e-13 83.2 107 39.3
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 3.5e-12 79.3 107 39.3
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 7.2e-10 71.6 83 48.2


User provided reference genes

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