Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0047421 Rosa chinensis HOM05D000917 ORTHO05D000764 6.9e-78 293.9 147 100.0
RcHm_v2.0_Chr5g0047601 Rosa chinensis HOM05D000917 ORTHO05D000764 2.6e-24 115.9 101 65.3
FAN10G0837 Fragaria x ananassa HOM05D000917 ORTHO05D000764 7.5e-24 114.4 102 65.7
FAN10G1250 Fragaria x ananassa HOM05D000917 ORTHO05D000764 7.5e-24 114.4 102 65.7
RcHm_v2.0_Chr5g0047791 Rosa chinensis HOM05D000917 ORTHO05D000764 9.8e-24 114.0 101 64.4
FvH4_7g18720 Fragaria vesca HOM05D000917 ORTHO05D000764 1.7e-23 113.2 102 64.7
FAN06G4976 Fragaria x ananassa HOM05D000917 ORTHO05D000764 1.7e-23 113.2 102 64.7
FAN06G1806 Fragaria x ananassa HOM05D000917 ORTHO05D000764 6.3e-23 111.3 102 63.7
FAN03G1968 Fragaria x ananassa HOM05D000917 ORTHO05D000764 8.3e-23 110.9 102 63.7
RcHm_v2.0_Chr5g0047631 Rosa chinensis HOM05D000917 ORTHO05D000764 1.1e-22 110.5 125 53.6
RcHm_v2.0_Chr1g0334231 Rosa chinensis HOM05D000917 ORTHO05D000764 3.1e-22 109.0 101 63.4
Prupe.6G141200 Prunus persica HOM05D000917 ORTHO05D000764 5.9e-21 104.8 75 70.7
MD00G1128400 Malus domestica HOM05D000917 ORTHO05D000764 2.0e-16 89.7 79 59.5
MD11G1172900 Malus domestica HOM05D000917 ORTHO05D000764 2.0e-16 89.7 79 59.5
QL01p011327 Quercus lobata HOM05D000917 ORTHO05D000764 2.2e-15 86.3 100 47.0
COL.COLO4_22659 Corchorus olitorius HOM05D000917 ORTHO05D000764 1.8e-14 83.2 76 51.3
Glyma.11G180000 Glycine max HOM05D000917 ORTHO05D000764 1.0e-12 77.4 75 52.0
Lj1A262T30 Lonicera japonica HOM05D000917 ORTHO05D000764 2.3e-12 76.3 73 53.4
Actinidia24243 Actinidia chinensis HOM05D000917 ORTHO05D000764 2.9e-12 75.9 80 48.8
CANSAT54G2535 Cannabis sativa HOM05D000917 ORTHO05D000764 6.6e-12 74.7 75 53.3
Duzib168G2090 Durio zibethinus HOM05D000917 ORTHO05D000764 6.6e-12 74.7 94 41.5
Medtr4g051920 Medicago truncatula HOM05D000917 ORTHO05D000764 8.6e-12 74.3 75 50.7
SalBow6G4640 Salvia bowleyana HOM05D000917 ORTHO05D000764 8.6e-12 74.3 74 50.0
Ah.08g223340 Amaranthus hybridus HOM05D000917 ORTHO05D000764 1.9e-11 73.2 75 46.7
CSS0005383 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 1.9e-11 73.2 75 50.7
Nn6g34737 Nelumbo nucifera HOM05D000917 ORTHO05D000764 3.3e-11 72.4 75 49.3
Glyma.12G093533 Glycine max HOM05D000917 ORTHO05D000764 4.3e-11 72.0 74 48.6
SalBow6G6826 Salvia bowleyana HOM05D000917 ORTHO05D000764 4.3e-11 72.0 74 50.0
Haze_23321 Corylus avellana HOM05D000917 ORTHO05D000764 5.6e-11 71.6 75 48.0
Psat7g187120 Pisum sativum HOM05D000917 ORTHO05D000764 5.6e-11 71.6 75 48.0
Dinv08134 Davidia involucrata HOM05D000917 ORTHO05D000764 7.3e-11 71.2 74 50.0
VMungo1127G1162 Vigna mungo HOM05D000917 ORTHO05D000764 9.5e-11 70.9 75 48.0
Actinidia24242 Actinidia chinensis HOM05D000917 ORTHO05D000764 1.2e-10 70.5 80 47.5
Ca_19461_v3 Cicer arietinum L. HOM05D000917 ORTHO05D000764 3.6e-10 68.9 74 45.9
Ca_29922_v3 Cicer arietinum L. HOM05D000917 ORTHO05D000764 3.6e-10 68.9 74 45.9
Rhsim05G0205200 Rhododendron simsii HOM05D000917 ORTHO05D000764 4.7e-10 68.6 76 48.7
Cfa009950 Carpinus fangiana HOM05D000917 ORTHO05D000764 6.1e-10 68.2 75 44.0
DCAR_006180 Daucus carota HOM05D000917 ORTHO05D000764 6.1e-10 68.2 79 45.6
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 6.1e-10 68.2 79 44.3
SGA_v2.0_scaffold22G09790 Striga asiatica HOM05D000917 ORTHO05D000764 8.0e-10 67.8 73 49.3
TPR.G4606 Trifolium pratense HOM05D000917 ORTHO05D000764 8.0e-10 67.8 75 45.3
TAR381G0010 Trochodendron aralioides HOM05D000917 ORTHO05D000764 8.0e-10 67.8 76 50.0
AUR62020242 Chenopodium quinoa HOM05D000917 ORTHO05D000764 1.0e-09 67.4 75 44.0
TPR.G4659 Trifolium pratense HOM05D000917 ORTHO05D000764 1.8e-09 66.6 75 44.0
Phvul.011G097800 Phaseolus vulgaris HOM05D000917 ORTHO05D000764 2.3e-09 66.2 75 46.7
MBI17_g25806_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 4.0e-09 65.5 100 41.0
EL10Ac7g16317 Beta vulgaris HOM05D000917 ORTHO05D000764 5.2e-09 65.1 77 44.2
Gorai.013G257000 Gossypium raimondii HOM05D000917 ORTHO05D000764 5.2e-09 65.1 74 45.9
Lsat_1_v5_gn_3_126020 Lactuca sativa HOM05D000917 ORTHO05D000764 5.2e-09 65.1 76 46.1
SGA_v2.0_scaffold92G28246 Striga asiatica HOM05D000917 ORTHO05D000764 5.2e-09 65.1 100 42.0
MBI17_g25959_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D020850 6.8e-09 64.7 89 44.9
Haze_23318 Corylus avellana HOM05D000917 ORTHO05D000764 1.5e-08 63.5 75 44.0
MSTRG.1204 Avicennia marina HOM05D000917 ORTHO05D000764 2.6e-08 62.8 75 45.3
Dinv31829 Davidia involucrata HOM05D000917 ORTHO05D000764 2.6e-08 62.8 72 47.2
RcHm_v2.0_Chr5g0047991 Rosa chinensis HOM05D000917 ORTHO05D000764 2.6e-08 62.8 35 82.9
Lsat_1_v5_gn_3_126060 Lactuca sativa HOM05D000917 ORTHO05D000764 3.4e-08 62.4 76 44.7
Lj3g0013540 Lotus japonicus HOM05D000917 ORTHO05D000764 4.4e-08 62.0 75 40.0
Migut.D02397 Erythranthe guttata HOM05D000917 ORTHO05D000764 5.8e-08 61.6 74 44.6
Gorai.013G257600 Gossypium raimondii HOM05D000917 ORTHO05D000764 5.8e-08 61.6 99 38.4
Lalb_Chr01g0004981 Lupinus albus HOM05D000917 ORTHO05D000764 5.8e-08 61.6 74 41.9
MBI17_g22145_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 5.8e-08 61.6 88 40.9
ECA238G2273 Erigeron canadensis HOM05D000917 ORTHO05D000764 7.5e-08 61.2 75 42.7
Nn6g32346 Nelumbo nucifera HOM05D000917 ORTHO05D000764 7.5e-08 61.2 77 46.8
Aqoxy1G00694 Aquilegia oxysepala HOM05D000917 ORTHO05D000764 9.8e-08 60.8 74 43.2
EL10Ac1g01590 Beta vulgaris HOM05D000917 ORTHO05D000764 9.8e-08 60.8 72 48.6
AUR62001541 Chenopodium quinoa HOM05D000917 ORTHO05D000764 9.8e-08 60.8 69 44.9
Lsat_1_v5_gn_7_22361 Lactuca sativa HOM05D000917 ORTHO05D000764 9.8e-08 60.8 75 42.7
GSVIVG01036052001 Vitis vinifera HOM05D000917 ORTHO05D000764 9.8e-08 60.8 70 48.6
MSTRG.25234 Avicennia marina HOM05D000917 ORTHO05D000764 1.3e-07 60.5 74 43.2
Nn5g29327 Nelumbo nucifera HOM05D000917 ORTHO05D000764 1.3e-07 60.5 76 44.7
PSO675G6048 Papaver somniferum HOM05D000917 ORTHO05D000764 1.3e-07 60.5 75 49.3
SHI35676 Sapria himalayana HOM05D000917 ORTHO05D000764 1.3e-07 60.5 96 39.6
TAR623G1026 Trochodendron aralioides HOM05D000917 ORTHO05D000764 1.3e-07 60.5 68 50.0
Lj4A26G46 Lonicera japonica HOM05D000917 ORTHO05D000764 2.2e-07 59.7 76 43.4
Eucgr.F01638 Eucalyptus grandis HOM05D000917 ORTHO05D000764 2.9e-07 59.3 75 41.3
Nitab4.5_0001988g0080 Nicotiana tabacum HOM05D000917 ORTHO05D000764 2.9e-07 59.3 76 42.1
Aqoxy5G01764 Aquilegia oxysepala HOM05D000917 ORTHO05D000764 3.7e-07 58.9 72 51.4
Haze_23320 Corylus avellana HOM05D000917 ORTHO05D000764 3.7e-07 58.9 75 42.7
Gohir.A05G257200 Gossypium hirsutum HOM05D000917 ORTHO05D000764 3.7e-07 58.9 78 42.3
Gohir.D05G258700 Gossypium hirsutum HOM05D000917 ORTHO05D000764 3.7e-07 58.9 78 42.3
Gorai.009G270300 Gossypium raimondii HOM05D000917 ORTHO05D000764 3.7e-07 58.9 78 42.3
Hund24102 Selenicereus undatus HOM05D000917 ORTHO05D000764 3.7e-07 58.9 76 43.4
Thecc.08G042300 Theobroma cacao HOM05D000917 ORTHO05D000764 3.7e-07 58.9 72 47.2
PSO700G0073 Papaver somniferum HOM05D000917 ORTHO05D000764 4.9e-07 58.5 76 44.7
Potri.005G237500 Populus trichocarpa HOM05D000917 ORTHO05D000764 4.9e-07 58.5 72 47.2
arahy.Tifrunner.gnm1.ann1.IGC1S7 Arachis hypogaea HOM05D000917 ORTHO05D000764 6.4e-07 58.2 72 43.1
arahy.Tifrunner.gnm1.ann1.XF1QK2 Arachis hypogaea HOM05D000917 ORTHO05D000764 6.4e-07 58.2 72 43.1
CiPaw.13G131200 Carya illinoinensis HOM05D000917 ORTHO05D000764 6.4e-07 58.2 89 43.8
ClCG09G021910 Citrullus lanatus HOM05D000917 ORTHO05D000764 6.4e-07 58.2 76 42.1
Gorai.009G195600 Gossypium raimondii HOM05D000917 ORTHO05D000764 6.4e-07 58.2 74 41.9
HanXRQChr03g0092921 Helianthus annuus HOM05D000917 ORTHO05D000764 6.4e-07 58.2 76 43.4
Potri.002G024100 Populus trichocarpa HOM05D000917 ORTHO05D000764 6.4e-07 58.2 76 40.8
Prupe.1G367600 Prunus persica HOM05D000917 ORTHO05D000764 6.4e-07 58.2 71 45.1
Sc02g0008510 Simmondsia chinensis HOM05D000917 ORTHO05D000764 6.4e-07 58.2 76 44.7
VMungo0251G2960 Vigna mungo HOM05D000917 ORTHO05D000764 6.4e-07 58.2 76 39.5
CiPaw.07G151800 Carya illinoinensis HOM05D000917 ORTHO05D000764 8.3e-07 57.8 76 39.5
Duzib041G0621 Durio zibethinus HOM05D000917 ORTHO05D000764 8.3e-07 57.8 78 43.6
Nitab4.5_0000192g0070 Nicotiana tabacum HOM05D000917 ORTHO05D000764 8.3e-07 57.8 76 40.8
PSO170G2341 Papaver somniferum HOM05D000917 ORTHO05D000764 8.3e-07 57.8 76 44.7
PSO478G3549 Papaver somniferum HOM05D000917 ORTHO05D000764 8.3e-07 57.8 76 46.1
PSO541G0541 Papaver somniferum HOM05D000917 ORTHO05D000764 8.3e-07 57.8 76 46.1
PSO541G1877 Papaver somniferum HOM05D000917 ORTHO05D000764 8.3e-07 57.8 76 46.1
PSO675G2904 Papaver somniferum HOM05D000917 ORTHO05D000764 8.3e-07 57.8 76 46.1
unitig_578.g16094 Utricularia gibba HOM05D000917 ORTHO05D000764 8.3e-07 57.8 74 44.6
Ciclev10000087m.g Citrus clementina HOM05D000917 ORTHO05D000764 1.1e-06 57.4 72 47.2
Solyc04g081280.3 Solanum lycopersicum HOM05D000917 ORTHO05D000764 1.1e-06 57.4 75 38.7
Sopen04g034900 Solanum pennellii HOM05D000917 ORTHO05D000764 1.1e-06 57.4 75 38.7
CSS0031470 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 1.4e-06 57.0 72 44.4
MELO3C002953.2 Cucumis melo HOM05D000917 ORTHO05D000764 1.4e-06 57.0 76 40.8
Gohir.D05G190300 Gossypium hirsutum HOM05D000917 ORTHO05D000764 1.4e-06 57.0 74 40.5
HanXRQChr12g0379411 Helianthus annuus HOM05D000917 ORTHO05D000764 1.4e-06 57.0 73 41.1
HanXRQChr15g0471811 Helianthus annuus HOM05D000917 ORTHO05D000764 1.4e-06 57.0 74 39.2
Phvul.001G007900 Phaseolus vulgaris HOM05D000917 ORTHO05D000764 1.4e-06 57.0 78 38.5
PGSC0003DMG400003725 Solanum tuberosum HOM05D000917 ORTHO05D000764 1.4e-06 57.0 75 38.7
CAN.G1925.7 Capsicum annuum HOM05D000917 ORTHO05D000764 1.9e-06 56.6 76 42.1
Glyma.14G218000 Glycine max HOM05D000917 ORTHO05D000764 1.9e-06 56.6 72 41.7
Lsat_1_v5_gn_3_104380 Lactuca sativa HOM05D000917 ORTHO05D000764 1.9e-06 56.6 74 41.9
PSO210G7244 Papaver somniferum HOM05D000917 ORTHO05D000764 1.9e-06 56.6 76 44.7
PSO832G1120 Papaver somniferum HOM05D000917 ORTHO05D000764 1.9e-06 56.6 76 44.7
QL02p011305 Quercus lobata HOM05D000917 ORTHO05D000764 1.9e-06 56.6 76 40.8
Rhsim06G0022800 Rhododendron simsii HOM05D000917 ORTHO05D000764 1.9e-06 56.6 76 40.8
ATR0577G001 Amborella trichopoda HOM05D000917 ORTHO05D000764 2.4e-06 56.2 74 45.9
CARHR069050 Cardamine hirsuta HOM05D000917 ORTHO05D000764 2.4e-06 56.2 72 47.2
Cfa009964 Carpinus fangiana HOM05D000917 ORTHO05D000764 2.4e-06 56.2 74 41.9
AUR62026673 Chenopodium quinoa HOM05D000917 ORTHO05D000764 2.4e-06 56.2 78 43.6
Solyc12g089280.2 Solanum lycopersicum HOM05D000917 ORTHO05D000764 2.4e-06 56.2 79 40.5
Sopen12g031150 Solanum pennellii HOM05D000917 ORTHO05D000764 2.4e-06 56.2 79 41.8
TWI36G0418 Tripterygium wilfordii HOM05D000917 ORTHO05D000764 2.4e-06 56.2 79 38.0
Actinidia15410 Actinidia chinensis HOM05D000917 ORTHO05D000764 3.2e-06 55.8 76 40.8
AL2G35640 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 3.2e-06 55.8 72 47.2
AT1G75660 Arabidopsis thaliana HOM05D000917 ORTHO05D000764 3.2e-06 55.8 72 47.2
Carub.0002s2249 Capsella rubella HOM05D000917 ORTHO05D000764 3.2e-06 55.8 72 47.2
CDE04G2188 Ceratophyllum demersum HOM05D000917 ORTHO05D000764 3.2e-06 55.8 76 43.4
Cc01_g08590 Coffea canephora HOM05D000917 ORTHO05D000764 3.2e-06 55.8 75 40.0
Haze_23325 Corylus avellana HOM05D000917 ORTHO05D000764 3.2e-06 55.8 78 44.9
CsaV3_5G025260 Cucumis sativus L. HOM05D000917 ORTHO05D000764 3.2e-06 55.8 76 39.5
Glyma.17G257100 Glycine max HOM05D000917 ORTHO05D000764 3.2e-06 55.8 72 41.7
Hma1.2p1_0638F.1_g193730 Hydrangea macrophylla HOM05D000917 ORTHO05D000764 3.2e-06 55.8 72 45.8
MBI18_g09965_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 3.2e-06 55.8 76 43.4
Manes.05G149100 Manihot esculenta HOM05D000917 ORTHO05D000764 3.2e-06 55.8 72 41.7
PSO781G0270 Papaver somniferum HOM05D000917 ORTHO05D000764 3.2e-06 55.8 76 42.1
vmacro21716 Vaccinium macrocarpon HOM05D000917 ORTHO05D000764 3.2e-06 55.8 76 42.1
VMungo0647G2420 Vigna mungo HOM05D000917 ORTHO05D000764 3.2e-06 55.8 78 37.2
Aa31LG3G570 Aethionema arabicum HOM05D000917 ORTHO05D000764 4.1e-06 55.5 72 47.2
AUR62040580 Chenopodium quinoa HOM05D000917 ORTHO05D000764 4.1e-06 55.5 72 47.2
Duzib093G1078 Durio zibethinus HOM05D000917 ORTHO05D000764 4.1e-06 55.5 77 40.3
Migut.C00811 Erythranthe guttata HOM05D000917 ORTHO05D000764 4.1e-06 55.5 72 44.4
Thhalv10018062m.g Eutrema salsugineum HOM05D000917 ORTHO05D000764 4.1e-06 55.5 72 47.2
HanXRQChr14g0430181 Helianthus annuus HOM05D000917 ORTHO05D000764 4.1e-06 55.5 75 40.0
Lalb_Chr24g0398741 Lupinus albus HOM05D000917 ORTHO05D000764 4.1e-06 55.5 74 43.2
Oeu007335.1 Olea europaea HOM05D000917 ORTHO05D000764 4.1e-06 55.5 72 43.1
Sabra05G0183600 Salix brachista HOM05D000917 ORTHO05D000764 4.1e-06 55.5 72 43.1
Sp5g30760 Schrenkiella parvula HOM05D000917 ORTHO05D000764 4.1e-06 55.5 72 47.2
TAR625G1417 Trochodendron aralioides HOM05D000917 ORTHO05D000764 4.1e-06 55.5 76 43.4
HPP92_025363 Vanilla planifolia HOM05D000917 ORTHO05D000764 4.1e-06 55.5 76 42.1
CiPaw.08G065200 Carya illinoinensis HOM05D000917 ORTHO05D000764 5.4e-06 55.1 76 38.2
Phvul.003G280400 Phaseolus vulgaris HOM05D000917 ORTHO05D000764 5.4e-06 55.1 76 38.2
Hund05196 Selenicereus undatus HOM05D000917 ORTHO05D000764 5.4e-06 55.1 72 43.1
Aa31sc115G40 Aethionema arabicum HOM05D000917 ORTHO05D000764 7.0e-06 54.7 72 47.2
AL8G18770 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 7.0e-06 54.7 73 42.5
CAN.G311.9 Capsicum annuum HOM05D000917 ORTHO05D000764 7.0e-06 54.7 75 37.3
Cfa013934 Carpinus fangiana HOM05D000917 ORTHO05D000764 7.0e-06 54.7 72 40.3
Ca_13409_v3 Cicer arietinum L. HOM05D000917 ORTHO05D000764 7.0e-06 54.7 76 38.2
Cc10_g01840 Coffea canephora HOM05D000917 ORTHO05D000764 7.0e-06 54.7 76 39.5
Haze_22617 Corylus avellana HOM05D000917 ORTHO05D000764 7.0e-06 54.7 72 40.3
ECA246G2463 Erigeron canadensis HOM05D000917 ORTHO05D000764 7.0e-06 54.7 73 38.4
Gohir.A05G187400 Gossypium hirsutum HOM05D000917 ORTHO05D000764 7.0e-06 54.7 74 39.2
MBI09_g29274_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 7.0e-06 54.7 76 43.4
Rhsim07G0246300 Rhododendron simsii HOM05D000917 ORTHO05D000764 7.0e-06 54.7 75 41.3
CANSAT35G1375 Cannabis sativa HOM05D000917 ORTHO05D000764 9.2e-06 54.3 72 44.4
CBR_g311 Chara braunii HOM05D000917 ORTHO05D000764 9.2e-06 54.3 76 38.2
MD15G1014000 Malus domestica HOM05D000917 ORTHO05D000764 9.2e-06 54.3 71 40.8
Zm00001eb127930 Zea mays HOM05D000917 ORTHO05D000764 9.2e-06 54.3 75 42.7


User provided reference genes

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