Gene: COL.COLO4_22659

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_22659
  • Transcript Identifier COL.rna21405
  • Gene Type Coding gene
  • Location AWUE01018017.1 : 99912-105821 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna21405
  • GenBank OMO83181.1
  • id gene22631
  • gene_name COLO4_22659
  • uniprot A0A1R3IKY2

Descriptions

  • Description putative 5-3 exonuclease protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004534
IEA
GOA Database5'-3' exoribonuclease activity
GO:0004534
IEA
InterPro5'-3' exoribonuclease activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004527
IEA
InterProexonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Cre06.g280050

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017151 5'-3' exoribonuclease type 2
IPR027073 5'-3' exoribonuclease
IPR041412 Xrn1, helical domain
IPR004859 Putative 5-3 exonuclease
Mapman id Description
35.1 not assigned.annotated